TY - JOUR AU - van Berkum, N. L. AU - Holstege, F. C. PY - 2001 DA - 2001// TI - DNA microarrays: raising the profile. JO - Curr Opin Biotechnol VL - 12 UR - https://doi.org/10.1016/S0958-1669(00)00173-7 DO - 10.1016/S0958-1669(00)00173-7 ID - van Berkum2001 ER - TY - JOUR AU - D'haeseleer, P. AU - Liang, S. AU - Somogyi, R. PY - 2000 DA - 2000// TI - Genetic network inference: from co-expression clustering to reverse engineering. JO - Bioinformatics VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.8.707 DO - 10.1093/bioinformatics/16.8.707 ID - D'haeseleer2000 ER - TY - JOUR AU - Pe'er, D. AU - Regev, A. AU - Elidan, G. AU - Friedman, N. PY - 2001 DA - 2001// TI - Inferring subnetworks from perturbed expression profiles. JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.suppl_1.S215 DO - 10.1093/bioinformatics/17.suppl_1.S215 ID - Pe'er2001 ER - TY - CHAP AU - Akutsu, T. AU - Miyano, S. AU - Kuhara, S. PY - 2000 DA - 2000// TI - Algorithms for inferring qualitative models of biological networks. BT - Pac Symp Biocomput ID - Akutsu2000 ER - TY - JOUR AU - Friedman, N. AU - Linial, M. AU - Nachman, I. AU - Pe'er, D. PY - 2000 DA - 2000// TI - Using Bayesian networks to analyze expression data. JO - J Comput Biol VL - 7 UR - https://doi.org/10.1089/106652700750050961 DO - 10.1089/106652700750050961 ID - Friedman2000 ER - TY - JOUR AU - Kauffman, S. A. PY - 1969 DA - 1969// TI - Metabolic stability and epigenesis in randomly connected nets. JO - J Theor Biol VL - 22 UR - https://doi.org/10.1016/0022-5193(69)90015-0 DO - 10.1016/0022-5193(69)90015-0 ID - Kauffman1969 ER - TY - CHAP AU - Chen, T. AU - He, H. L. AU - Church, G. M. PY - 1999 DA - 1999// TI - Modeling gene expression with differential equations. BT - Pac Symp Biocomput ID - Chen1999 ER - TY - CHAP AU - D'haeseleer, P. AU - Liang, S. AU - Somogyi, R. PY - 1999 DA - 1999// TI - Tutorial on gene expression data analysis and modeling. BT - Pac Symp Biocomput ID - D'haeseleer1999 ER - TY - JOUR AU - Spellman, P. T. AU - Sherlock, G. AU - Zhang, M. Q. AU - Iyer, V. R. AU - Anders, K. AU - Eisen, M. B. AU - Brown, P. O. AU - Botstein, D. AU - Futcher, B. PY - 1998 DA - 1998// TI - Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiaeby microarray hybridization. JO - Mol Biol Cell VL - 9 UR - https://doi.org/10.1091/mbc.9.12.3273 DO - 10.1091/mbc.9.12.3273 ID - Spellman1998 ER - TY - JOUR AU - Cho, R. J. AU - Campbell, M. J. AU - Winzeler, E. A. AU - Steinmetz, L. AU - Conway, A. AU - Wodicka, L. AU - Wolfsberg, T. G. AU - Gabrielian, A. E. AU - Landsman, D. AU - Lockhart, D. J. AU - Davis, R. W. PY - 1998 DA - 1998// TI - A genome-wide transcriptional analysis of the mitotic cell cycle. JO - Mol Cell VL - 2 UR - https://doi.org/10.1016/S1097-2765(00)80114-8 DO - 10.1016/S1097-2765(00)80114-8 ID - Cho1998 ER - TY - JOUR AU - Brazma, A. AU - Hingamp, P. AU - Quackenbush, J. AU - Sherlock, G. AU - Spellman, P. AU - Stoeckert, C. AU - Aach, J. AU - Ansorge, W. AU - Ball, C. A. AU - Causton, H. C. PY - 2001 DA - 2001// TI - Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. JO - Nat Genet VL - 29 UR - https://doi.org/10.1038/ng1201-365 DO - 10.1038/ng1201-365 ID - Brazma2001 ER - TY - JOUR AU - Quackenbush, J. PY - 2001 DA - 2001// TI - Computational genetics: computational analysis of microarray data. JO - Nat Rev Genet VL - 2 UR - https://doi.org/10.1038/35076576 DO - 10.1038/35076576 ID - Quackenbush2001 ER - TY - STD TI - PubMed. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi] UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi ID - ref13 ER - TY - STD TI - YPD. [http://www.proteome.com/databases/YPD/YPDsearch-quick.html] UR - http://www.proteome.com/databases/YPD/YPDsearch-quick.html ID - ref14 ER - TY - JOUR AU - Chen, K. C. AU - Csikasz-Nagy, A. AU - Gyorffy, B. AU - Val, J. AU - Novak, B. AU - Tyson, J. J. PY - 2000 DA - 2000// TI - Kinetic analysis of a molecular model of the budding yeast cell cycle. JO - Mol Biol Cell VL - 11 UR - https://doi.org/10.1091/mbc.11.1.369 DO - 10.1091/mbc.11.1.369 ID - Chen2000 ER - TY - CHAP AU - Witten, I. AU - Frank, E. PY - 1999 DA - 1999// BT - Data Mining - Practical Machine Learning Tools and Techniques with JAVA Implementations. PB - Morgan Kaufmann CY - San Francisco, CA ID - Witten1999 ER - TY - CHAP AU - Kohavi, R. PY - 1995 DA - 1995// BT - Wrappers for performance enhancement and oblivious decision graphs. ID - Kohavi1995 ER - TY - JOUR AU - Schneider, B. L. AU - Patton, E. E. AU - Lanker, S. AU - Mendenhall, M. D. AU - Wittenberg, C. AU - Futcher, B. AU - Tyers, M. PY - 1998 DA - 1998// TI - Yeast G1 cyclins are unstable in G1 phase. JO - Nature VL - 395 UR - https://doi.org/10.1038/25774 DO - 10.1038/25774 ID - Schneider1998 ER - TY - JOUR AU - Althoefer, H. AU - Schleiffer, A. AU - Wassmann, K. AU - Nordheim, A. AU - Ammerer, G. PY - 1995 DA - 1995// TI - Mcm1 is required to coordinate G2-specific transcription in Saccharomyces cerevisiae. JO - Mol Cell Biol VL - 15 UR - https://doi.org/10.1128/MCB.15.11.5917 DO - 10.1128/MCB.15.11.5917 ID - Althoefer1995 ER - TY - JOUR AU - Loy, C. J. AU - Lydall, D. AU - Surana, U. PY - 1999 DA - 1999// TI - NDD1, a high-dosage suppressor of cdc28-1N, is essential for expression of a subset of late-S-phase-specific genes in S. cerevisiae. JO - Mol Cell Biol VL - 19 UR - https://doi.org/10.1128/MCB.19.5.3312 DO - 10.1128/MCB.19.5.3312 ID - Loy1999 ER - TY - JOUR AU - Toyn, J. H. AU - Johnson, A. L. AU - Donovan, J. D. AU - Toone, W. M. AU - Johnston, L. H. PY - 1997 DA - 1997// TI - The Swi5 transcription factor of Saccharomyces cerevisiaehas a role in exit from mitosis through induction of the Cdk-inhibitor Sic1 in telophase. JO - Genetics VL - 145 ID - Toyn1997 ER - TY - JOUR AU - Hwang, L. H. AU - Lau, L. F. AU - Smith, D. L. AU - Mistrot, C. A. AU - Hardwick, K. G. AU - Hwang, E. S. AU - Amon, A. AU - Murray, A. W. PY - 1998 DA - 1998// TI - Budding yeast CDC20: a target of the spindle checkpoint. JO - Science VL - 279 UR - https://doi.org/10.1126/science.279.5353.1041 DO - 10.1126/science.279.5353.1041 ID - Hwang1998 ER - TY - JOUR AU - Reed, S. I. AU - Wittenberg, C. PY - 1990 DA - 1990// TI - Mitotic role for the CDC28 protein kinase of Saccharomyces cerevisiae. JO - Proc Natl Acad Sci USA VL - 87 UR - https://doi.org/10.1073/pnas.87.15.5697 DO - 10.1073/pnas.87.15.5697 ID - Reed1990 ER - TY - JOUR AU - Cvrckova, F. AU - Nasmyth, K. PY - 1993 DA - 1993// TI - Yeast G1 cyclins CLN1 and CLN2and a GAP-like protein have a role in bud formation. JO - EMBO J VL - 12 ID - Cvrckova1993 ER - TY - JOUR AU - Benton, B. K. AU - Tinkelenberg, A. H. AU - Jean, D. AU - Plump, S. D. AU - Cross, F. R. PY - 1993 DA - 1993// TI - Genetic analysis of Cln/CDC28regulation of cell morphogenesis in budding yeast. JO - EMBO J VL - 12 ID - Benton1993 ER - TY - JOUR AU - Jaspersen, S. L. AU - Charles, J. F. AU - Morgan, D. O. PY - 1999 DA - 1999// TI - Inhibitory phosphorylation of the APC regulator Hct1 is controlled by the kinase CDC28and the phosphatase Cdc14. JO - Curr Biol VL - 9 UR - https://doi.org/10.1016/S0960-9822(99)80111-0 DO - 10.1016/S0960-9822(99)80111-0 ID - Jaspersen1999 ER - TY - CHAP AU - Quinlan, J. R. PY - 1992 DA - 1992// BT - C4.5: Programs for Machine Learning PB - Morgan Kaufmann CY - San Francisco, CA ID - Quinlan1992 ER - TY - CHAP AU - Fayyad, U. AU - Irani, K. PY - 1993 DA - 1993// TI - Multi-interval discretization of continuous-valued attributes for classification learning. BT - In Proceedings of the Thirteenth International Joint Conference on Artificial Intelligence PB - Morgan Kaufmann CY - San Mateo, CA ID - Fayyad1993 ER - TY - CHAP AU - Kohavi, R. AU - Sahami, M. ED - Simoudis, E. ED - Han, J. ED - Fayyad, U. PY - 1996 DA - 1996// TI - Error-based and entropy-based discretization of continuous features. BT - In Proceedings of the Second International Conference on Knowledge Discovery and Data Mining PB - The AAAI Press CY - Menlo Park, CA ID - Kohavi1996 ER - TY - STD TI - WEKA. [http://www.cs.waikato.ac.nz/~ml/weka] UR - http://www.cs.waikato.ac.nz/~ml/weka ID - ref30 ER - TY - JOUR AU - Lim, T. -. S. AU - Loh, W. -. Y. AU - Shih, Y. -. S. PY - 2000 DA - 2000// TI - A comparison of prediction accuracy, complexity, and training time of thirty-three old and new classification algorithms. JO - Machine Learning VL - 40 UR - https://doi.org/10.1023/A:1007608224229 DO - 10.1023/A:1007608224229 ID - Lim2000 ER - TY - CHAP AU - Martin, J. K. AU - Hirschberg, D. S. PY - 1996 DA - 1996// TI - Small sample statistics for classification error rates ii: confidence intervals and significance tests. BT - Technical Report No. 96-22 PB - University of California, Irvine CY - Irvine, CA ID - Martin1996 ER - TY - JOUR AU - Koranda, M. AU - Schleiffer, A. AU - Endler, L. AU - Ammerer, G. PY - 2000 DA - 2000// TI - Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters. JO - Nature VL - 406 UR - https://doi.org/10.1038/35017589 DO - 10.1038/35017589 ID - Koranda2000 ER - TY - JOUR AU - Goebl, M. G. AU - Goetsch, L. AU - Byers, B. PY - 1994 DA - 1994// TI - The Ubc3 (Cdc34) ubiquitin-conjugating enzyme is ubiquitinated and phosphorylated in vivo. JO - Mol Cell Biol VL - 14 UR - https://doi.org/10.1128/MCB.14.5.3022 DO - 10.1128/MCB.14.5.3022 ID - Goebl1994 ER - TY - JOUR AU - Willems, A. R. AU - Goh, T. AU - Taylor, L. AU - Chernushevich, I. AU - Shevchenko, A. AU - Tyers, M. PY - 1999 DA - 1999// TI - SCF ubiquitin protein ligases and phosphorylation-dependent proteolysis. JO - Philos Trans R Soc Lond B Biol Sci VL - 354 UR - https://doi.org/10.1098/rstb.1999.0497 DO - 10.1098/rstb.1999.0497 ID - Willems1999 ER -