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Table 5 False postives and true positives in top 500, when the proportion unchanged equals 10% and the number of genes equals 10000.

From: Ranking genes with respect to differential expression

Method

False positive

True positive

lognormal

samroc

115

385

t-test

161

339

Wilcoxon

197

303

Fold Change

411

89

MG

48

452

Bayes

128

372

SAM

143

357

normal

samroc

156

344

t-test

166

334

Wilcoxon

197

303

Fold Change

325

175

MG

411

89

Bayes

253

247

SAM

161

339