Table 4 Arginine and codon usage in each one of the 28 proteomes
From: Preferred codons and amino acid couples in hyperthermophiles
Strains | CGN (%) | AGR (%) | Arg (%) | G+C(%) | OGT (°C) |
|---|---|---|---|---|---|
Hiper - Procarya | |||||
P. abyssi | 7.0 | 93.0 | 5.73 | 44.6 | 96 |
P. horikoshii | 6.8 | 93.2 | 5.60 | 42.0 | 98 |
A. aeolicus | 8.0 | 92.0 | 4.92 | 43.2 | 87 |
M. jannashii | 2.0 | 98.0 | 3.82 | 31.3 | 85 |
A. fulgidus | 9.4 | 90.6 | 5.76 | 43.2 | 83 |
T. matitima | 18.0 | 82.0 | 5.51 | 46.1 | 80 |
Termo - Procarya | |||||
M. thermoautotroficum | 21.0 | 79.0 | 6.78 | 49.5 | 65 |
T. volcanium | 20.0 | 80.0 | 4.62 | 39.9 | 60 |
T. acidophilum | 23.62 | 76.38 | 5.0 | 45.9 | 59 |
Sulfulobus | 8.92 | 91.02 | 4.0 | 35.7 | 65 |
Meso - Procarya | |||||
E. coli | 92.0 | 8.0 | 5.7 | 50.7 | 37 |
V. cholerae | 91.5 | 8.5 | 4.97 | 47.6 | 35 |
D. radiodurans | 95.5 | 4.5 | 7.35 | 66.9 | 35 |
M. tuberculosis | 92.6 | 7.4 | 8.43 | 65.6 | 36 |
N. miningitidis | 88.0 | 12.0 | 5.58 | 51.4 | 35 |
M. genitalium | 42.0 | 58.0 | 3.57 | 35 | 37 |
T. pallidum | 85.0 | 15.0 | 7.43 | 52.7 | 36 |
P. aeruginosa | 95.2 | 4.8 | 8.46 | 66.4 | 37 |
H. influenza | 91.0 | 9.0 | 4.48 | 38 | 37 |
B. subtilis | 63.0 | 37.0 | 4.24 | 43.5 | 30 |
Synechocystis | 80.0 | 20.0 | 5.11 | 47.6 | 25 |
X. fastidiosa | 91.7 | 8.3 | 6.67 | 52.6 | 25 |
Halobacterium sp | 96.1 | 3.9 | 4.0 | 66.88 | 30 |
Meso - Eucarya | |||||
S. cerevisiae | 30.5 | 69.5 | 4.44 | 39.7 | 28 |
C. elegans | 44.2 | 55.8 | 5.19 | 42.6 | 25 |
A. thaliana | 62.3 | 37.7 | 5.35 | 44.2 | 24 |
D. melanogaster | 79.1 | 20.9 | 5.49 | 53.9 | 32 |
H. sapiens | 78.75 | 21.25 | 5.5 | 52.66 | 37 |