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Figure 2 | Genome Biology

Figure 2

From: Software and methods for oligonucleotide and cDNA array data analysis

Figure 2

Two comparison files loaded into Bullfrog using the HTML-based graphical user interface. For each comparison file, array hybridization data are displayed in the summary table to the right of the file name. This summary information is used to identify experiments that may be of questionable quality due to an elevated background, elevated noise (RawQ), very low percentage of genes called present (%P or M), a high scaling factor (SF), or high actin or GAPDH 3'/5' ratios. Other information presented in the summary table includes the scaling target value (TGT), the number of probe sets on the array (#PS), and the number of probe sets filtered (#filt) after ignoring control probe sets.

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