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Table 1 Putative protein-coding genes identified in Gemmata obscuriglobus

From: Gene discovery within the planctomycete division of the domain Bacteria using sequence tags from genomic DNA libraries

Clone number GenBank accession Best BLASTX match E value of best match Species of best match (GenBank accession number) Domain of best match*
Metabolism and biosynthesis      
   G63 BH001096 Putative isopropylmalate dehydratase 9.00E-09 Methanococcus jannaschii (Q58673) B
   G80 BH001097 Heptaprenyl diphosphate synthase component 6.00E-18 Bacillus stearothermophilus (P55785) B
   G83 BH001098 Peptide methionine sulfoxide reductase 4.00E-11 Deinococcus radiodurans (Q9RTB6) B
   G84 BH001099 N4-(beta-N-acetylglucosaminyl)-L-asparaginase precursor 6.00E-27 Flavobacterium meningosepticum (Q47898) B
   G87 BH001100 3-Oxoadipate enol-lactonase 2.00E-08 Acinetobacter calcoaceticus (P00632) B
   G103 BH001101 Diaminopimelate epimerase 2.00E-43 Synechocystis PCC6803 (P74667) B
   G108 BH001102 FDHD protein homolog 2.00E-45 Streptomyces coelicolor (Q9ZBWO) B
   G110 BH001103 Acyl-CoA fatty-acid delta (9) desaturase 3.00E-05 Rattus norvegicus (P07308) E
   G136 BH001104 1,4-Alpha-glucan branching enzyme 4.00E-11 Bacillus caldolyticus (P30537) B
   G179 BH001105 Putative asparagine synthetase (glutamine-hydrolyzing) 2.00E-07 Mycobacterium tuberculosis (O10374) B
   G184 BH001106 2-Amino-3-ketobutyrate coenzyme A ligase 5.00E-25 Bacillus subtilis (O31777) B
   G222 BH001107 Threonine dehydratase biosynthetic (threonine deaminase) 9.00E-53 Burkholderia cepacia (P53607) B
   G240 BH001108 Ribonucleotide reductase large chain 1.00E-05 Schizosaccharomyces pombe (P36602) E
Transport      
   G74 BH001109 Large conductance mechanosensitive channel 8.00E-10 Haemophilus influenzae (P44789) B
   G139 BH001110 Cadmium efflux system accessory protein 4.00E-05 Listeria monocytogenes (Q56405) B
   G185 BH001111 Sulfate transport ATP-binding protein CysA 6.00E-35 Synechocystis PCC6803 (P74548) B
Regulation and signal transduction      
   G99 BH001112 OmpR homolog 6.00E-11 Guillardia theta chloroplast (AF041468) E(c)
   G114 BH001113 Nitrogen regulation protein NtrB 2.00E-16 Bradyrhizobium sp.(P10578) B
   G217 BH001114 Transcriptional regulatory protein AfsQ1 3.00E-09 Streptomyces coelicolor (Q04942) B
   G223 BH001115 Transcriptional repressor SmtB 2.00E-05 Synechococcus PCC7942 (P30340) B
DNA replication/insertion      
   VG33 BH001116 Replicative DNA helicase 2.00E-11 Synechocystis PCC6803 (Q55418) B
   G86 BH001117 H repeat-associated protein in RHSC-PHRB intergenic region 1.00E-17 Escherichia coli (P75741) B
   G142 BH001118 TraI protein (DNA helicase I) 2.00E-12 Escherichia coli (P14565) B
   G165 BH001119 Insertion element IS402 hypothetical 24 kd 6.00E-05 Burkholderia cepacia (P24536) B
   G182 BH001120 Putative helicase HelY 5.00E-05 Mycobacterium tuberculosis (Q10701) B
   G196 BH001121 TraI protein (DNA helicase I) 3.00E-12 Escherichia coli (P14565) B
   G235 BH001122 Probable transposase for insertion sequence element IS702 3.00E-18 Fremyella diplosiphon (Q00462) B
Translation      
   G51 BH001123 50S ribosomal protein L23 1.00E-13 Aquifex aeolicus (O66433) B
   G154 BH001124 50S ribosomal protein L4 3.00E-10 Bacillus stearothermophilus (P28601) B
   G156 BH001125 Arginyl-tRNA synthetase 4.00E-21 Escherichia coli (P11875) B
   G230 BH001126 Probable tRNA methyl transferase 5.00E-05 Synechocystis PCC6803 (P73755) B
Miscellaneous      
   VG17 BH001127 Serine-threonine protein kinase 1.00E-22 Myxococcus xanthus (P54737) B
   G92 BH001128 Cell division protein FtsH 4.00E-04 Lactococcus lactis subsp. lactis (P46469) B
   G149 BH001129 Integrin alpha-V (vitronectin receptor alpha subunit precursor) 9.00E-05 Homo sapiens (P06756) E
   G159 BH001130 Serine protease DO-like precursor 7.00E-10 Chlamydia trachomatis (P18584) B
   G189 BH001131 H repeat-associated protein in RHSE-NARV intergenic region 2.00E-13 Escherichia coli (P28917) B
   G191 BH001132 Ribonuclease inhibitor 6.00E-05 Sus scrofa (P10775) E
Hypothetical proteins      
   VG21 BH001133 Hypothetical 47.5 kDa protein Cy9c4.09 1.00E-04 Mycobacterium tuberculosis (Q50739) B
   G76 BH001134 Hypothetical protein in DHLA 3' region 3.00E-17 Xanthobacter autotrophicus (P22644) B
   G96 BH001135 Hypothetical 42.1 kDa protein 5.00E-04 Bacillus subtilis (O31712) B
   G137 BH001136 Hypothetical protein in DHLA 3' region 4.00E-31 Xanthobacter autotrophicus (P22644) B
   G180 BH001137 Hypothetical 30.2 kDa protein SLR1717 1.00E-29 Synechocystis strain PCC6803 (P73846) B
   G231 BH001138 Hypothetical protein MJ0682 2.00E-35 Methanococcus jannaschii (Q58095) A
  1. *B, Bacteria; A, Archaea; E, Eukarya; E(c), eukaryal chloroplast.