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Table 4 The complete list of bHLH genes from Caenorhabditis elegans

From: Phylogenetic analysis of the human basic helix-loop-helix proteins

Sequence name

Family

Localization

Accession number

HLH-2 (MO5B5.5)

E12/E47

I: 1,82

TR:Q17588

HLH-1 (BO3O4.1)

MyoD

II: -4,51

SW:P22980

HLH-3 (T29B8.6)

Achaete-Scute a

II: 1

gb|AAB38323.1

C18A3.8

Achaete-Scute a

II:1,11

TR:Q09961

F57C12.3

Achaete-Scute a

X: -19,47

TR:Q20941

C28C12.8

Achaete-Scute a

IV: 3,86

TR:Q18277

T15H9.3

Achaete-Scute b

II: 1,51

emb|CAA87416.1

C34E10.7 (cnd-1)

NeuroD

III: -2,01

sp|P46581

Y69A2AR

Neurogenin

****

****

F38C2.2

Beta3

IV: 24,06

TR:O45489

DY3.3

Beta3/Oligo

I: 3,04

TR:O45320

T14F9.5 (lin-32)

Atonal

X: -15,13

TR:10574

T05G5.2

Net

III:0,92

sp|P34555|YNP2

ZK682.4

MyoR

V: 1,87

TR:Q23579

HLH-8 (CO2B8.4)

Twist

X: -0,63

gb|AAC26105.1

C44C10.8

Hand

X: 5,8

TR:Q18612

F48D6.3

PTFb

X: -8,42

TR:Q20561

C43H6.8

NSCL

X: -14

TR:Q18590

F46G10.6

Max

X: 12,32

TR/Q18711

T19B10.11

Max

V: 3,05

TR:P90982

RO3E9.1 (MDL-1)

Mad

X:-2,63

sp|Q21663

F40G9.11

USF

III: -28,29

gb|AAC68792

W02C12.3

MITF

IV: -1, 14

TR:P91527

F58A4.7

AP4

III: 0,63

SW:P34474

Y47D3B.7

SREBP

III: 8,9

TR:Q9XX00

T20B12.6

TF4/Mlx

III:-0,71

gb|AAA19059.1

C15C8.2

Clock

V: 4,63

emb|CAA99775.1

C41G7.5

AHR

I: 3,75

emb|CAB51463.1

F38A6.3

HIF

V: 27,08

pir||T21944

T01D3.2

HIF/Sim/Trh

V: 5,39

TR:P90953

C25A11.1 (AHA-1)

ARNT

X: 0,43

TR:O02219

lin-22

E (spl)

IV: 6,9

gb|AAB68848.1

Y16B4A.1 (Unc-3)

COE

X: 19,39

gb|AAC06226.1

Y39A3CR.6

Orphan

III: -19,16

gb|AAF605231

T01E8.2 (REF-1) *

Orphan

II: 2,22

emb|CAA88744.1

C17C3.10 *

Orphan

II: -1,28

gb|AAB52693.1

F31A3.4 (F31A3.2) *

Orphan

X: 24,06

TR:Q19917

C17C3.7 *

Orphan

II: -1,28

gb|AAK31421

C17C3.8 *

Orphan

II:1,28

TR:Q18053

  1. Gene identifications are those of the C. elegans genome project. The localization of the genes referred to the worm recombination genetic map as found in Wormbase [82]. Sequences marked with an asterisk form a well supported monophyletic group and encode proteins with two bHLH (see text for details). The Y69A2AR gene was not found in the databases. Its sequence comes from [45].