Table 5 Alternative acceptor and donor splice sites, alternative 5'exons, and exon skipping examples based on cDNA alignments

Alternative acceptor splice sites

   At3g58710

WRKY DNA-binding protein

Ceres:100465, gi:15991735

   At5g35680

Expressed protein

Ceres:11304, gi:14596002

   At2g38860

Expressed protein

Ceres:114031, gi:13122287

   At4g31550

DNA-binding protein

Ceres:11953, gi:15384214

   At1g22700

Expressed protein

Ceres:120133, gi:15294175

   At4g30480

Expressed protein

Ceres:12573, gi:14423435

   At1g52870

Expressed protein

Ceres:126586, gi:14326544

   At5g41810

Expressed protein

Ceres:126660, gi:14532565

   At1g63970

Expressed protein

Ceres:15758, gi:11386014

   At2g33830

Auxin-regulated protein

Ceres:1711, gi:11127600

   At5g20040

IPP transferase

Ceres:19250, gi:14279069

   At3g55330

Oxygen-evloving complex subunit

Ceres:21674, Ceres:3747

   At1g60850

RNA polymerase subunit

Ceres:21961, gi:514321

   At1g76405

Expressed protein

Ceres:23773, gi:13358245

   At1g22630

Expressed protein

Ceres:37537, gi:15010607

   At1g02500

S-adenosylmethionine synthase

Ceres:37800, gi:15450420

   At4g20380

Zinc finger protein Lsd1

Ceres:38456, gi:1872520

   At3g54380

Expressed protein

Ceres:38778, gi:14423485

   At3g04830

Expressed protein

Ceres:38917, gi:15293268

   At1g11840

Lactoylglutathione lyase

Ceres:39107, gi:11094298

   At1g02090

COP9 complex subunit

Ceres:40042, gi:3288822

   At1g79650

DNA repair protein RAD23

Ceres:40579, gi:14334441

   At2g25625

Expressed protein

Ceres:465, gi:14334615

   At4g02640

Expressed protein

Ceres:6568, gi:10954094

   At3g11930

Ethylene-responsive protein

Ceres:7474, gi:13926249

   At2g20820

Expressed protein

Ceres:91872, gi:14190456

   At3g09150

Expressed protein

Ceres:98026, gi:13359272

Alternative donor splice sites

   At1g16460

Mercaptopyruvate sulfurtransferase

Ceres:111646, gi:6009982

   At5g16540

Zinc finger protein 3

Ceres:113763, gi:4689375

   At2g41070

bZIP family transcription factor

Ceres:114632, gi:13346156

   At2g36000

Expressed protein

Ceres:123727, gi:14532493

   At3g21175

Expressed protein

Ceres:12996, gi:14596058

   At5g61880

Expressed protein

Ceres:146274, gi:14517497

   At3g14230

RAP2 family protein

Ceres:158240, gi:15450917

   At3g03890

Expressed protein

Ceres:18355, gi:14190432

   At1g67700

Expressed protein

Ceres:19973, gi:15215605

   At3g55630

Tetrahydrofolylpolyglutamate synthase

Ceres:230791, gi:15292866

   At2g21620

Expressed protein

Ceres:31655, gi:15320407

   At4g10100

Expressed protein

Ceres:35962, gi:6635742

   At1g23950

Expressed protein

Ceres:41387, gi:15146261

   At1g24260

Floral homeotic protein

Ceres:5055, gi:2345157

   At2g39730

Expressed protein

Ceres:7114, gi:15450670

   At3g07760

Expressed protein

Ceres:7246, gi:15451021

   At3g06720

Importin alpha

Ceres:9351, gi:4191743

Alternative 5' exons

   At3g57810

Expressed protein

Ceres:101256, Ceres:29384

   At3g03780

Methionine synthase

Ceres:111720, gi:14532771

   At5g59890

Actin depolymerizing factor 4

Ceres:11691, gi:15215858

   At3g49010

60S ribosomal protein L13

Ceres:12182, gi:15292840

   At5g52210

GTP-binding protein

Ceres:16621, gi:1184980

   At1g01100

Acidic ribosomal protein

Ceres:24367, gi:15293082

   At2g41430

ERD15

Ceres:31388, gi:13926319

   At3g08580

Adenylate translocator

Ceres:36818, gi:1433

   At5g05000

GTP-binding protein

Ceres:6734, gi:1151243

   At3g48880

Expressed protein

Ceres:99337, gi:15028346

Exon skipping

   At5g54940

Translation initiation factor

Ceres:103464, Ceres:32071

   At2g46800

Zinc transporter

Ceres:207558, gi:4206639

   At5g53860

Expressed protein

Ceres:22860, gi:15215799

   At5g27840

TOPP8 Ser/Thr protein phosphatase type-1

Ceres:38656, gi:14596132

   At3g23280

Expressed protein

Ceres:41648, gi:15010671

   At1g77080

Expressed protein

Ceres:92459, gi:11545544, gi:11545546, gi:13649968