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Table 2 Comparison of lengths of cDNA alignments for the 5,016 cDNA sequences

From: Full-length messenger RNA sequences greatly improve genome annotation

  gap2 est_genome GeneSeqer
sim4 32/34 6/652 31/67
gap2   2/708 3/50
est_genome 706/708   706/733
  1. Entries show the number of sequences for which the program listed along the top produced a longer alignment than the program listed on the left; for example, the entry 32/34 indicates that gap2 produced a longer alignment in 32 cases out of the total 34 for which sim4 and gap2 had alignments of different lengths.