TY - BOOK AU - Alberts, B. AU - Bray, D. AU - Lewis, J. AU - Raff, M. AU - Roberts, K. AU - Watson, J. D. PY - 1999 DA - 1999// TI - Molecular Biology of the Cell. New York and London: Garland Publishing: ID - Alberts1999 ER - TY - JOUR AU - Hong, W. PY - 1998 DA - 1998// TI - Protein transport from the endoplasmic reticulum to the Golgi apparatus. JO - J Cell Sci VL - 111 ID - Hong1998 ER - TY - JOUR AU - Bannykh, S. I. AU - Nishimura, N. AU - Balch, W. E. PY - 1998 DA - 1998// TI - Getting into the Golgi. JO - Trends Cell Biol VL - 8 UR - https://doi.org/10.1016/S0962-8924(97)01184-7 DO - 10.1016/S0962-8924(97)01184-7 ID - Bannykh1998 ER - TY - JOUR AU - Bannykh, S. I. AU - Rowe, T. AU - Balch, W. E. PY - 1996 DA - 1996// TI - The organization of endoplasmic reticulum export complexes. JO - J Cell Biol VL - 135 UR - https://doi.org/10.1083/jcb.135.1.19 DO - 10.1083/jcb.135.1.19 ID - Bannykh1996 ER - TY - JOUR AU - Wada, I. AU - Rindress, D. AU - Cameron, P. H. AU - Ou, W. J. AU - Doherty, J. J. AU - Louvard, D. AU - Bell, A. W. AU - Dignard, D. AU - Thomas, D. Y. AU - Bergeron, J. J. PY - 1991 DA - 1991// TI - SSR alpha and associated calnexin are major calcium binding proteins of the endoplasmic reticulum membrane. JO - J Biol Chem VL - 266 ID - Wada1991 ER - TY - JOUR AU - Schimmoller, F. AU - Singer-Kruger, B. AU - Schroder, S. AU - Kruger, U. AU - Barlowe, C. AU - Riezman, H. PY - 1995 DA - 1995// TI - The absence of Emp24p, a component of ER-derived COPII-coated vesicles, causes a defect in transport of selected proteins to the Golgi. JO - EMBO J VL - 14 ID - Schimmoller1995 ER - TY - JOUR AU - Stamnes, M. A. AU - Craighead, M. W. AU - Hoe, M. H. AU - Lampen, N. AU - Geromanos, S. AU - Tempst, P. AU - Rothman, J. E. PY - 1995 DA - 1995// TI - An integral membrane component of coatomer-coated transport vesicles defines a family of proteins involved in budding. JO - Proc Natl Acad Sci USA VL - 92 UR - https://doi.org/10.1073/pnas.92.17.8011 DO - 10.1073/pnas.92.17.8011 ID - Stamnes1995 ER - TY - JOUR AU - Marzioch, M. AU - Henthorn, D. C. AU - Herrmann, J. M. AU - Wilson, R. AU - Thomas, D. Y. AU - Bergeron, J. J. AU - Solari, R. C. AU - Rowley, A. PY - 1999 DA - 1999// TI - Erp1p and Erp2p, partners for Emp24p and Erv25p in a yeast p24 complex. JO - Mol Biol Cell VL - 10 UR - https://doi.org/10.1091/mbc.10.6.1923 DO - 10.1091/mbc.10.6.1923 ID - Marzioch1999 ER - TY - JOUR AU - Fiedler, K. AU - Veit, M. AU - Stamnes, M. A. AU - Rothman, J. E. PY - 1996 DA - 1996// TI - Bimodal interaction of coatomer with the p24 family of putative cargo receptors. JO - Science VL - 273 UR - https://doi.org/10.1126/science.273.5280.1396 DO - 10.1126/science.273.5280.1396 ID - Fiedler1996 ER - TY - JOUR AU - Ciufo, L. F. AU - Boyd, A. PY - 2000 DA - 2000// TI - Identification of a lumenal sequence specifying the assembly of Emp24p into p24 complexes in the yeast secretory pathway. JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.275.12.8382 DO - 10.1074/jbc.275.12.8382 ID - Ciufo2000 ER - TY - JOUR AU - Kuehn, M. J. AU - Herrmann, J. M. AU - Schekman, R. PY - 1998 DA - 1998// TI - COPII-cargo interactions direct protein sorting into ER-derived transport vesicles. JO - Nature VL - 391 UR - https://doi.org/10.1038/34438 DO - 10.1038/34438 ID - Kuehn1998 ER - TY - JOUR AU - Dominguez, M. AU - Dejgaard, K. AU - Fullekrug, J. AU - Dahan, S. AU - Fazel, A. AU - Paccaud, J. P. AU - Thomas, D. Y. AU - Bergeron, J. J. AU - Nilsson, T. PY - 1998 DA - 1998// TI - gp25L/emp24/p24 protein family members of the cis-Golgi network bind both COP I and II coatomer. JO - J Cell Biol VL - 140 UR - https://doi.org/10.1083/jcb.140.4.751 DO - 10.1083/jcb.140.4.751 ID - Dominguez1998 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Li, H. AU - Degenhardt, B. AU - Tobin, D. AU - Yao Zx, Z. X. AU - Tasken, K. AU - Papadopoulos, V. PY - 2001 DA - 2001// TI - Identification, localization, and function in steroidogenesis of PAP7: a peripheral-type benzodiazepine receptor- and PKA (RIalpha)-associated protein. JO - Mol Endocrinol VL - 15 ID - Li2001 ER - TY - JOUR AU - Rost, B. AU - Sander, C. PY - 1993 DA - 1993// TI - Prediction of protein secondary structure at better than 70% accuracy. JO - J Mol Biol VL - 232 UR - https://doi.org/10.1006/jmbi.1993.1413 DO - 10.1006/jmbi.1993.1413 ID - Rost1993 ER - TY - JOUR AU - Sohda, M. AU - Misumi, Y. AU - Yamamoto, A. AU - Yano, A. AU - Nakamura, N. AU - Ikehara, Y. PY - 2001 DA - 2001// TI - Identification and characterization of a novel Golgi protein, GCP60, that interacts with the integral membrane protein Giantin. JO - J Biol Chem VL - 276 UR - https://doi.org/10.1074/jbc.M108961200 DO - 10.1074/jbc.M108961200 ID - Sohda2001 ER - TY - JOUR AU - Muniz, M. AU - Nuoffer, C. AU - Hauri, H. P. AU - Riezman, H. PY - 2000 DA - 2000// TI - The Emp24 complex recruits a specific cargo molecule into endoplasmic reticulum-derived vesicles. JO - J Cell Biol VL - 148 UR - https://doi.org/10.1083/jcb.148.5.925 DO - 10.1083/jcb.148.5.925 ID - Muniz2000 ER - TY - JOUR AU - Springer, S. AU - Chen, E. AU - Duden, R. AU - Marzioch, M. AU - Rowley, A. AU - Hamamoto, S. AU - Merchant, S. AU - Schekman, R. PY - 2000 DA - 2000// TI - The p24 proteins are not essential for vesicular transport in Saccharomyces cerevisiae. JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.070044097 DO - 10.1073/pnas.070044097 ID - Springer2000 ER - TY - JOUR AU - Gayle, M. A. AU - Slack, J. L. AU - Bonnert, T. P. AU - Renshaw, B. R. AU - Sonoda, G. AU - Taguchi, T. AU - Testa, J. R. AU - Dower, S. K. AU - Sims, J. E. PY - 1996 DA - 1996// TI - Cloning of a putative ligand for the T1/ST2 receptor. JO - J Biol Chem VL - 271 UR - https://doi.org/10.1074/jbc.271.10.5784 DO - 10.1074/jbc.271.10.5784 ID - Gayle1996 ER - TY - JOUR AU - Haslam, R. J. AU - Koide, H. B. AU - Hemmings, B. A. PY - 1993 DA - 1993// TI - Pleckstrin domain homology. JO - Nature VL - 363 UR - https://doi.org/10.1038/363309b0 DO - 10.1038/363309b0 ID - Haslam1993 ER - TY - JOUR AU - Mayer, B. J. AU - Ren, R. AU - Clark, K. L. AU - Baltimore, D. PY - 1993 DA - 1993// TI - A putative modular domain present in diverse signaling proteins. JO - Cell VL - 73 UR - https://doi.org/10.1016/0092-8674(93)90244-K DO - 10.1016/0092-8674(93)90244-K ID - Mayer1993 ER - TY - JOUR AU - Aravind, L. AU - Neuwald, A. F. AU - Ponting, C. P. PY - 1999 DA - 1999// TI - Sec14p-like domains in NF1 and Dbl-like proteins indicate lipid regulation of Ras and Rho signaling. JO - Curr Biol VL - 9 UR - https://doi.org/10.1016/S0960-9822(99)80127-4 DO - 10.1016/S0960-9822(99)80127-4 ID - Aravind1999 ER - TY - JOUR AU - Stenmark, H. AU - Aasland, R. PY - 1999 DA - 1999// TI - FYVE-finger proteins - effectors of an inositol lipid. JO - J Cell Sci VL - 112 ID - Stenmark1999 ER - TY - JOUR AU - Callebaut, I. AU - de Gunzburg, J. AU - Goud, B. AU - Mornon, J. P. PY - 2001 DA - 2001// TI - RUN domains: a new family of domains involved in Ras-like GTPase signaling. JO - Trends Biochem Sci VL - 26 UR - https://doi.org/10.1016/S0968-0004(00)01730-8 DO - 10.1016/S0968-0004(00)01730-8 ID - Callebaut2001 ER - TY - JOUR AU - Mari, M. AU - Macia, E. AU - Le Marchand-Brustel, Y. AU - Cormont, M. PY - 2001 DA - 2001// TI - Role of the FYVE finger and the RUN domain for the subcellular localization of Rabip4. JO - J Biol Chem VL - 276 UR - https://doi.org/10.1074/jbc.M104885200 DO - 10.1074/jbc.M104885200 ID - Mari2001 ER - TY - JOUR AU - Guzman-Rojas, L. AU - Sims, J. C. AU - Rangel, R. AU - Guret, C. AU - Sun, Y. AU - Alcocer, J. M. AU - Martinez-Valdez, H. PY - 2000 DA - 2000// TI - PRELI, the human homologue of the avian px19, is expressed by germinal center B lymphocytes. JO - Int Immunol VL - 12 UR - https://doi.org/10.1093/intimm/12.5.607 DO - 10.1093/intimm/12.5.607 ID - Guzman-Rojas2000 ER - TY - JOUR AU - Nakai, M. AU - Takada, T. AU - Endo, T. PY - 1993 DA - 1993// TI - Cloning of the YAP19 gene encoding a putative yeast homolog of AP19, the mammalian small chain of the clathrin-assembly proteins. JO - Biochim Biophys Acta VL - 1174 UR - https://doi.org/10.1016/0167-4781(93)90198-M DO - 10.1016/0167-4781(93)90198-M ID - Nakai1993 ER - TY - JOUR AU - Aravind, L. AU - Koonin, E. V. PY - 1999 DA - 1999// TI - Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. JO - J Mol Biol VL - 287 UR - https://doi.org/10.1006/jmbi.1999.2653 DO - 10.1006/jmbi.1999.2653 ID - Aravind1999 ER - TY - JOUR AU - Schaffer, A. A. AU - Wolf, Y. I. AU - Ponting, C. P. AU - Koonin, E. V. AU - Aravind, L. AU - Altschul, S. F. PY - 1999 DA - 1999// TI - IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. JO - Bioinformatics VL - 15 UR - https://doi.org/10.1093/bioinformatics/15.12.1000 DO - 10.1093/bioinformatics/15.12.1000 ID - Schaffer1999 ER - TY - STD TI - IMPALA ftp site. [ftp://ftp.ncbi.nih.gov/pub/impala/] UR - ftp://ftp.ncbi.nih.gov/pub/impala/ ID - ref30 ER - TY - STD TI - NCBI Conserved domain database search. [http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi] UR - http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi ID - ref31 ER - TY - JOUR AU - Notredame, C. AU - Higgins, D. G. AU - Heringa, J. PY - 2000 DA - 2000// TI - T-Coffee: a novel method for fast and accurate multiple sequence alignment. JO - J Mol Biol VL - 302 UR - https://doi.org/10.1006/jmbi.2000.4042 DO - 10.1006/jmbi.2000.4042 ID - Notredame2000 ER - TY - JOUR AU - Nielsen, H. AU - Engelbrecht, J. AU - Brunak, S. AU - von Heijne, G. PY - 1997 DA - 1997// TI - A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. JO - Int J Neural Syst VL - 8 UR - https://doi.org/10.1142/S0129065797000537 DO - 10.1142/S0129065797000537 ID - Nielsen1997 ER - TY - JOUR AU - Nielsen, H. AU - Engelbrecht, J. AU - Brunak, S. AU - von Heijne, G. PY - 1997 DA - 1997// TI - Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. JO - Protein Eng VL - 10 UR - https://doi.org/10.1093/protein/10.1.1 DO - 10.1093/protein/10.1.1 ID - Nielsen1997 ER - TY - JOUR AU - von Heijne, G. PY - 1992 DA - 1992// TI - Membrane protein structure prediction: hydrophobicity analysis and the 'positive inside' rule. JO - J Mol Biol VL - 225 UR - https://doi.org/10.1016/0022-2836(92)90934-C DO - 10.1016/0022-2836(92)90934-C ID - von Heijne1992 ER - TY - JOUR AU - Felsenstein, J. PY - 1996 DA - 1996// TI - Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. JO - Methods Enzymol VL - 266 UR - https://doi.org/10.1016/S0076-6879(96)66026-1 DO - 10.1016/S0076-6879(96)66026-1 ID - Felsenstein1996 ER - TY - JOUR AU - Hasegawa, M. AU - Kishino, H. AU - Saitou, N. PY - 1991 DA - 1991// TI - On the maximum likelihood method in molecular phylogenetics. JO - J Mol Evol VL - 32 UR - https://doi.org/10.1007/BF02101285 DO - 10.1007/BF02101285 ID - Hasegawa1991 ER - TY - JOUR AU - Felsenstein, J. PY - 1989 DA - 1989// TI - PHYLIP - Phylogeny Inference Package (Version 3.2). JO - Cladistics VL - 5 ID - Felsenstein1989 ER -