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Table 2 Top-ranked 50 genes (25 pairs) for colon tumor/normal class separation using AP (all pairs) ranking

From: New feature subset selection procedures for classification of expression profiles

Pair rank Gene ID Pair t-score Gene t-score Gene rank Gene annotation
1 M63391 10.02 5.57 2 Human desmin gene, complete cds
1 H08393 10.02 5.47 4 Collagen alpha 2(XI) chain (H. sapiens)
2 X12671 9.85 5.37 5 Human gene for heterogeneous nuclear ribonucleoprotein (hnRNP) core protein A1
2 Z50753 9.85 5.09 9 H. sapiens mRNA for GCAP-II/uroguanylin precursor
3 R87126 9.58 6.37 1 Myosin heavy chain, nonmuscle (Gallus gallus)
3 X63629 9.58 4.86 12 H. sapiens mRNA for p cadherin
4 M36634 9.27 4.65 15 Human vasoactive intestinal peptide (VIP) mRNA, complete cds
4 H11084 9.27 3.55 65 Vascular endothelial growth factor (Cavia porcellus)
5 J05032 8.96 5.2 8 Human aspartyl-tRNA synthetase alpha-2 subunit mRNA, complete cds
5 U19969 8.96 3.05 132 Human two-handed zinc finger protein ZEB mRNA, partial cds
6 J02854 8.94 5.28 7 Myosin regulatory light chain 2, smooth muscle isoform (human) (contains element TAR1 repetitive element)
6 R54097 8.94 3.93 46 Translational initiation factor 2 beta subunit (human)
7 H06524 8.89 4.18 29 Gelsolin precursor, plasma (human)
7 U22055 8.89 3.77 51 Human 100 kDa coactivator mRNA, complete cds
8 M76378 8.74 4.81 13 Human cysteine-rich protein (CRP) gene, exons 5 and 6
8 T62947 8.74 4.12 34 60S ribosomal protein L24 (Arabidopsis thaliana)
9 D21261 8.67 3.46 76 SM22-alpha homolog (human)
9 H20709 8.67 2.69 203 Myosin light chain alkali, smooth-muscle isoform (human)
10 X86693 8.64 4.16 30 H. sapiens mRNA for hevin like protein
10 D14812 8.64 2.66 211 Human mRNA for ORF, complete cds
11 H09719 8.35 2.57 237 Tubulin alpha-6 chain (Mus musculus)
11 L07648 8.35 2.31 321 Human MXI1 mRNA, complete cds
12 X12369 8.25 3.27 97 Tropomyosin alpha chain, smooth muscle (human)
12 R98842 8.25 3.05 131 Prothymosin alpha (H. sapiens)
13 J04102 8.11 3.06 128 Human erythroblastosis virus oncogene homolog 2 (ets-2) mRNA, complete cds
13 U14631 8.11 2.84 164 Human 11 beta-hydroxysteroid dehydrogenase type II mRNA, complete cds
14 T63133 8.06 2.85 160 Thymosin beta-10 (human)
14 T61661 8.06 2.51 255 Profilin I (human)
15 T92451 8.06 4.12 33 Tropomyosin, fibroblast and epithelial muscle-type (human)
15 U09587 8.06 3.46 74 Human glycyl-tRNA synthetase mRNA, complete cds
16 T71025 8.0 4.34 24 Human
16 L11706 8.0 3.18 104 Human hormone-sensitive lipase (LIPE) gene, complete cds
17 Z48541 7.96 3.14 120 H. sapiens mRNA for protein tyrosine phosphatase
17 D25217 7.96 2.54 249 Human mRNA (KIAA0027) for ORF, partial cds
18 M76378 7.94 5.04 10 Human cysteine-rich protein (CRP) gene, exons 5 and 6
18 T56604 7.94 3.89 48 Tubulin beta chain (Haliotis discus)
19 X54942 7.93 4.42 23 H. sapiens ckshs2 mRNA for Cks1 protein homolog
19 R44301 7.93 3.36 85 Mineralocorticoid receptor (H. sapiens)
20 T90280 7.86 3.52 70 Ribophorin II precursor (human)
20 T51534 7.86 3.01 137 Cystatin C precursor (human)
21 R96357 7.81 2.89 156 Polyadenylate-binding protein (Xenopus laevis)
21 R46753 7.81 2.64 216 Cyclin-dependent kinase inhibitor 1 (H. sapiens)
22 M76378 7.75 4.51 20 Human cysteine-rich protein (CRP) gene, exons 5 and 6
22 D00860 7.75 3.38 81 Ribose-phosphate pyrophosphokinase I (human)
23 X14958 7.56 4.53 19 Human hmgI mRNA for high mobility group protein Y
23 X87159 7.56 2.63 221 H. sapiens mRNA for beta subunit of epithelial amiloride-sensitive sodium channel
24 T51023 7.55 4.12 32 Heat shock protein HSP 90-beta (human)
24 D31716 7.55 2.83 168 Human mRNA for GC box binding protein, complete cds
25 M26383 7.52 5.53 3 Human monocyte-derived neutrophil-activating protein (MONAP) mRNA, complete cds
25 T47377 7.52 4.11 35 S-100P protein (human)