Table 8 Dyad-analysis/sweeping predictions in regions without binding sites reported in RegulonDB
Regulatory protein and genes shown to be regulated by it | Above threshold | Site coordinates and number of matches | Site sequence |
|---|---|---|---|
ArcA (12) | |||
aceB | - | i:-144;f:-85;m:8 | TTATCAAGTATTTTTAATTAAAATGGAAATTGTTTTTGATTTTGCATTTTAAATGAGTAG |
fadB | - | i:-96;f:-51;m:6 | ATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACAC |
fumA | + | i:-77;f:-56;m:14 | TATTGTTACTCGCTTTTAACAG |
fumC | - | i:-92;f:-53;m:10 | ATTTGTTATCAAATGGTAAATAATAAGTGAGCTAAAAGTT |
glpA | - | i:-248;f:-232;m:8 | TTATTTATGATTAACAG |
hyaA | - | i:-168;f:-150;m:12 | TACGCTTTATTAACAATAC |
lpdA | + | i:-232;f:-204;m:15 | TGTTTAAAAATTGTTAACAATTTTGTAAA |
sucA | - | i:-323;f:-300;m:5 | TGTTGTTGCAACGTAATGCGTAAA |
ArgR (11) | |||
argD | - | i:-63;f:-51;m:5 | TTTTTATGCATAT |
FNR (4) | |||
aspA | - | i:-156;f:-144;m:3 | TGATCTATTTCAC |
cyoA | + | i:-25;f:2;m:5 | GATCCCGTGGAATTGAGGTCGTTAAATG |
icdA | + | i:-306;f:-292;m:6 | ATTGAACAGGATCAC |
sdhC | - | i:-340;f:-326;m:2 | GATGATTAAAAATTA |
LexA (9) | |||
umuD | + | i:-57;f:11;m:24 | CTGCTGGCAAGAACAGACTACTGTATATAAAAACAGTATAACTTCAGGCAGATTATTAT |
GTTGTTTATC | |||
Lrp (1) | |||
livK | + | i:-277;f:-269;m:2 | CAGCATAAT |
sdaA | - | - | - |
serA | - | i:-146;f:-139;m:1 | CAGCATAT |
NarL (1) | |||
adhE | - | i:-215;f:-201;m:1 | TACCCAGAAGTGAGT |
caiF | - | - | - |
torC | + | i:-209;f:-195;m:2 | TACCCCTCCTGAGTG |
PurR (15) | |||
codB | + | i:-82;f:-64;m:16 | ACGAAAACGATTGCTTTTT |
prsA | + | i:-356;f:-344;m:21 | GAAAACGTTTTCG |
speA | - | i:-132;f:-119;m:6 | GAAACCGGTTGCGC |