Table 7 Correspondence between the functional annotations of predicted genes and of known genes.
Regulon | Consensus/Patser | Dyad-analysis/sweeping | ||
|---|---|---|---|---|
Percent with related function | Percent without functional annotation | Percent with related function | Percent without functional annotation | |
AraC | 73.33 (66.67) | 37.50 (42.86) | 53.75 (51.32) | 36.51 (37.70) |
ArcA | 72.61 (70.75) | 45.86 (47.50) | 74.07 (70.83) | 40.88 (43.75) |
ArgR | 100.00 (100.00) | 18.18 (33.33) | 56.25 (36.36) | 51.52 (60.71) |
CRP | 93.90 (93.38) | 40.87 (43.63) | - | - |
CysB | 56.78 (56.56) | 43.03 (43.16) | - | - |
CytR | 53.90 (53.58) | 38.56 (38.72) | - | - |
FIS | 45.52 (45.11) | 41.23 (41.28) | - | - |
FNR | 82.85 (81.99) | 45.85 (47.06) | 83.77 (83.43) | 41.43 (41.92) |
FruR | 51.96 (51.29) | 36.57 (36.89) | - | - |
IHF | 80.95 (80.33) | 46.34 (47.14) | - | - |
LexA | 69.70 (61.54) | 42.11 (48.00) | 65.79 (58.06) | 38.71 (43.64) |
Lrp | 82.61 (81.95) | 43.67 (44.58) | - | - |
NarL | 73.38 (72.11) | 45.20 (46.35) | - | - |
PurR | 95.24 (92.31) | 8.70 (7.14) | 77.14 (70.37) | 22.22 (25.00) |
TrpR | 85.71 (50.00) | 30.00 (60.00) | 46.94 (40.91) | 42.35 (45.00) |
TyrR | 69.23 (50.00) | 18.75 (27.27) | 73.68 (61.54) | 32.14 (40.91) |