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Table 6 Binding sites remaining at best threshold

From: Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coliK12 DNA

  Consensus/Patser Dyad-analysis/dyad sweeping
Regulon Sites/sites 450/sites Sites/sites 450/sites
AraC 60.00 20.00 80.00 100.00
ArcA 80.00 90.00 90.00 90.00
ArgR 83.33 100.00 100.00 66.67
CRP 80.95 63.49 90.48 95.24
CysB 100.00 80.00 - -
CytR 100.00 16.67 - -
FIS 40.00 - - -
FNR 65.00 70.00 50.00 65.00
FruR 100.00 85.71 - -
Fur - - 75.00 -
GlpR - - 100.00 100.00
IHF 83.33 33.33 - -
LexA 87.50 87.50 87.50 100.00
Lrp 40.00 60.00 - -
MalT - - 75.00 100.00
NR_I - - 100.00 100.00
NagC - - - 50.00
NarL 77.78 22.22 - -
PhoB - - 75.00 75.00
PurR 69.23 84.62 92.31 84.62
TrpR 100.00 100.00 100.00 -
TyrR 62.5 87.50 75.00 37.50
Average 76.85 66.74 62.65 76.00
  1. For each family, we show the results with Dyad-analysis/sweeping and with Consensus/Patser accepting a match only if its score exceeds the defined best threshold. This threshold corresponds to the highest overall performance, see Figures 3 and 4. Otherwise the results are treated as explained in Table 4. The column names are as described in Tables 3 and 4.