Table 4 Pattern discovery at the level of binding sites
Consensus/Patser | Dyad-analysis/sweeping | |||||
|---|---|---|---|---|---|---|
Regulon | Sites/sites | 250/sites | 450/sites | Sites/sites | 250/sites | 450/sites |
AraC | 100.00 | 8.33 | 8.33 | 58.33 | - | 41.67 |
ArcA | 76.47 | 76.47 | 47.06 | 76.47 | - | 76.47 |
ArgR | 75.00 | 58.33 | 58.33 | 100.00 | 16.67 | 50.00 |
CRP | 90.53 | 87.37 | 88.42 | 66.32 | 46.32 | 47.37 |
CysB | 100.00 | 42.86 | 28.57 | - | - | - |
CytR | 100.00 | 12.50 | 12.50 | - | - | - |
FIS | 55.56 | 66.67 | - | - | - | - |
FNR | 93.10 | 65.52 | 51.72 | 58.62 | 41.38 | 41.38 |
FadR | 83.33 | 50.00 | - | - | - | - |
FruR | 100.00 | 14.29 | 71.43 | 71.43 | - | - |
Fur | 100.00 | 66.67 | 11.11 | 77.78 | - | - |
GlpR | 60.00 | 40.00 | 40.00 | 80.00 | 33.33 | 46.67 |
IHF | 72.22 | 66.67 | 22.22 | 50.00 | - | - |
LexA | 100.00 | 88.89 | 88.89 | 100.00 | 100.00 | 100.00 |
Lrp | 78.95 | 47.37 | 26.32 | 36.84 | - | - |
MalT | 66.67 | 22.22 | 22.22 | 55.56 | 44.44 | 77.78 |
NR_I | 77.78 | 55.56 | 55.56 | 77.78 | 77.78 | 77.78 |
NagC | 57.14 | 14.29 | 14.29 | - | - | 28.57 |
NarL | 75.00 | 35.00 | 15.00 | 55.00 | - | - |
OmpR | 71.43 | - | 7.14 | 42.86 | - | - |
OxyR | 75.00 | 25.00 | - | - | - | - |
PhoB | 71.43 | 57.14 | 57.14 | 71.43 | 71.43 | 42.86 |
PurR | 92.86 | 85.71 | 78.57 | 92.86 | 78.57 | 85.71 |
TrpR | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 |
TyrR | 86.67 | 73.33 | 66.67 | 53.33 | 46.67 | 60.00 |
Average | 88.59 | 60.36 | 53.07 | 75.19 | 70.76 | 65.64 |