|
Gene
|
Consensus/Patser
|
Dyad sweeping
|
|---|
|
b1728
|
+
|
sc:10.89
|
+
|
m:13
|
|
b1741
|
-
|
-
|
+
|
m:9
|
|
dinD
|
+
|
sc:14.01
|
+
|
m:20
|
|
dinG
|
+
|
sc:9.11
|
+
|
m:16
|
|
dinI
|
+
|
sc:12.22
|
+
|
m:12
|
|
dinP
|
-
|
-
|
+
|
m:14
|
|
ftsK
|
-
|
sc:7.82
|
+
|
m:11
|
|
lexA
|
+
|
sc:17.45
|
+
|
m:21
|
|
molR_1
|
+
|
sc:10.46
|
-
|
m:8
|
|
polB
|
-
|
sc:8.30
|
+
|
m:14
|
|
recA
|
+
|
sc:14.71
|
+
|
m:32
|
|
recN
|
+
|
sc:13.56
|
+
|
m:23
|
|
ruvA
|
+
|
sc:11.12
|
-
|
m:8
|
|
sbmC
|
+
|
sc:14.08
|
+
|
m:27
|
|
ssb
|
+
|
sc:12.99
|
+
|
m:29
|
|
sulA
|
+
|
sc:15.64
|
+
|
m:22
|
|
umuD
|
+
|
sc:10.80
|
+
|
m:24
|
|
uvrA
|
+
|
sc:16.30
|
+
|
m:29
|
|
uvrB
|
+
|
sc:14.94
|
+
|
m:12
|
|
uvrD
|
+
|
sc:16.07
|
+
|
m:15
|
|
ybfE
|
-
|
sc:8.18
|
-
|
m:3
|
|
yebG
|
+
|
sc:14.37
|
+
|
m:23
|
|
yjiW
|
+
|
sc:12.21
|
+
|
m:14
|
- Fernandez De Henestrosa et al. [15] experimentally characterized new LexA-binding sites, which are not included in RegulonDB. The table shows our binding-site predictions with dyad sweeping and with Patser, using their corresponding best overall performance thresholds. sc, Score as obtained by Patser; m, maximum number of matching dyads. Note that most genes clearly have ROMs with 10 or more matches and with scores of Patser above 10.
