Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coliK12 DNA

Table 10 Predictions in experimentally characterized binding sites for LexA

Fernandez De Henestrosa et al. [15] experimentally characterized new LexA-binding sites, which are not included in RegulonDB. The table shows our binding-site predictions with dyad sweeping and with Patser, using their corresponding best overall performance thresholds. sc, Score as obtained by Patser; m, maximum number of matching dyads. Note that most genes clearly have ROMs with 10 or more matches and with scores of Patser above 10.

ISSN: 1474-760X