Table 2 The transposable elements of D. melanogaster
From: The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
Class | Family | Canonical length | X | 2L | 2R | 3L | 3R | 4 | Total number | Number full length | Number partial | Number in proximal 2 Mb | Average pairwise distance |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LTR | 17.6 | 7439 | 2 | 0 | 3 | 5 | 2 | 0 | 12 | 7 | 5 | 4 | 0.006 |
| Â | 1731 | 4648 | 1 | 0 | 0 | 0 | 1 | 0 | 2 | 1 | 1 | 1 | 0.000 |
| Â | 297 | 6995 | 22 | 12 | 6 | 7 | 10 | 0 | 57 | 18 | 39 | 12 | 0.032 |
| Â | 3S18 | 6126 | 4 | 0 | 1 | 1 | 0 | 0 | 6 | 4 | 2 | 3 | 0.075 |
| Â | 412 | 7566 | 8 | 0 | 7 | 11 | 5 | 0 | 31 | 24 | 7 | 6 | 0.024 |
| Â | accord | 7404 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | - |
| Â | aurora | 4263 | 0 | 0 | 2 | 1 | 0 | 0 | 3 | 1 | 2 | 3 | 0.074 |
| Â | blastopia | 5034 | 5 | 2 | 7 | 1 | 2 | 0 | 17 | 13 | 4 | 4 | 0.016 |
| Â | blood | 7410 | 1 | 11 | 2 | 3 | 5 | 0 | 22 | 22 | 0 | 6 | 0.001 |
| Â | Burdock | 6411 | 2 | 4 | 4 | 0 | 3 | 0 | 13 | 7 | 6 | 4 | 0.002 |
| Â | Circe | 6356 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 0 | 2 | 2 | 0.057 |
| Â | copia | 5143 | 4 | 13 | 4 | 5 | 4 | 0 | 30 | 26 | 4 | 3 | 0.002 |
| Â | diver | 6112 | 1 | 1 | 3 | 1 | 3 | 0 | 9 | 9 | 0 | 1 | 0.002 |
| Â | diver2 | 4917 | 0 | 4 | 3 | 2 | 0 | 0 | 9 | 0 | 9 | 9 | 0.032 |
| Â | Dm88 | 4558 | 0 | 0 | 2 | 0 | 30 | 0 | 32 | 0 | 32 | 2 | 0.015 |
| Â | frogger | 2483 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | - |
| Â | GATE | 8507 | 1 | 0 | 16 | 0 | 0 | 3 | 20 | 0 | 20 | 17 | 0.077 |
| Â | gtwin | 7411 | 2 | 2 | 0 | 2 | 0 | 0 | 6 | 2 | 4 | 3 | 0.038 |
| Â | gypsy | 7469 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 0.000 |
| Â | gypsy2 | 6841 | 1 | 0 | 0 | 2 | 0 | 0 | 3 | 1 | 2 | 2 | 0.067 |
| Â | gypsy3 | 6973 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 1 | 1 | 2 | 0.038 |
| Â | gypsy4 | 6852 | 0 | 1 | 0 | 0 | 1 | 0 | 2 | 1 | 1 | 2 | 0.041 |
| Â | gypsy5 | 7369 | 1 | 0 | 0 | 1 | 0 | 0 | 2 | 1 | 1 | 0 | 0.005 |
| Â | gypsy6 | 7826 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | - |
| Â | HMS-Beagle | 7062 | 4 | 5 | 1 | 0 | 3 | 0 | 13 | 9 | 4 | 3 | 0.054 |
| Â | Idefix | 7411 | 1 | 2 | 0 | 3 | 1 | 0 | 7 | 2 | 5 | 5 | 0.022 |
| Â | invader1 | 4032 | 0 | 0 | 4 | 3 | 18 | 1 | 26 | 1 | 25 | 7 | 0.023 |
| Â | invader2 | 5124 | 1 | 4 | 3 | 2 | 0 | 0 | 10 | 3 | 7 | 10 | 0.053 |
| Â | invader3 | 5484 | 2 | 5 | 2 | 2 | 5 | 0 | 16 | 3 | 13 | 5 | 0.044 |
| Â | invader4 | 3105 | 0 | 4 | 2 | 1 | 1 | 1 | 9 | 2 | 7 | 2 | 0.068 |
| Â | invader5 | 4038 | 1 | 4 | 0 | 1 | 0 | 0 | 6 | 0 | 6 | 6 | 0.068 |
| Â | McClintock | 6450 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | 2 | 0 | 1 | 0.002 |
| Â | mdg1 | 7480 | 5 | 2 | 9 | 6 | 3 | 0 | 25 | 13 | 12 | 2 | 0.012 |
| Â | mdg3 | 5519 | 3 | 5 | 2 | 2 | 4 | 0 | 16 | 8 | 8 | 8 | 0.009 |
| Â | micropia | 5457 | 1 | 0 | 0 | 0 | 4 | 0 | 5 | 2 | 3 | 1 | 0.010 |
| Â | opus | 7521 | 3 | 6 | 6 | 6 | 3 | 0 | 24 | 16 | 8 | 5 | 0.003 |
| Â | qbert | 7650 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | - |
| Â | Quasimodo | 7387 | 2 | 7 | 0 | 4 | 1 | 0 | 14 | 5 | 9 | 5 | 0.016 |
| Â | roo | 9092 | 35 | 22 | 31 | 31 | 27 | 0 | 146 | 58 | 88 | 22 | 0.012 |
| Â | rooA | 7621 | 1 | 0 | 0 | 1 | 1 | 2 | 5 | 0 | 5 | 3 | 0.045 |
| Â | rover | 7318 | 3 | 0 | 1 | 0 | 2 | 0 | 6 | 3 | 3 | 3 | 0.035 |
| Â | springer | 7546 | 2 | 1 | 4 | 1 | 3 | 0 | 11 | 5 | 6 | 5 | 0.061 |
| Â | Stalker | 7256 | 3 | 1 | 0 | 5 | 3 | 0 | 12 | 3 | 9 | 7 | 0.014 |
| Â | Stalker2 | 8119 | 4 | 0 | 5 | 2 | 1 | 1 | 13 | 4 | 9 | 6 | 0.015 |
| Â | Stalker4 | 7379 | 1 | 0 | 0 | 0 | 1 | 0 | 2 | 2 | 0 | 0 | 0.001 |
| Â | Tabor | 7345 | 1 | 2 | 0 | 0 | 0 | 0 | 3 | 2 | 1 | 0 | 0.001 |
| Â | Tirant | 8526 | 4 | 3 | 3 | 4 | 5 | 1 | 20 | 15 | 5 | 5 | 0.001 |
| Â | Transpac | 5249 | 2 | 1 | 0 | 0 | 2 | 0 | 5 | 5 | 0 | 0 | 0.000 |
| Â | ZAM | 8435 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - |
LINE-like | baggins | 5453 | 1 | 2 | 10 | 0 | 0 | 1 | 14 | 0 | 14 | 12 | 0.076 |
| Â | BS | 5142 | 2 | 6 | 6 | 7 | 8 | 0 | 29 | 6 | 23 | 6 | 0.028 |
| Â | Cr1a | 4470 | 1 | 5 | 17 | 21 | 2 | 10 | 56 | 1 | 55 | 42 | NC |
| Â | Doc | 4725 | 5 | 16 | 5 | 19 | 10 | 0 | 55 | 30 | 25 | 7 | 0.006 |
| Â | Doc2 | 4789 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | - |
| Â | Doc3 | 4740 | 0 | 1 | 6 | 1 | 0 | 1 | 9 | 0 | 9 | 8 | 0.065 |
| Â | F | 4708 | 2 | 7 | 10 | 10 | 11 | 2 | 42 | 16 | 26 | 11 | 0.019 |
| Â | G | 4346 | 1 | 2 | 0 | 0 | 0 | 0 | 3 | 0 | 3 | 1 | 0.059 |
| Â | G2 | 3102 | 1 | 9 | 1 | 2 | 1 | 0 | 14 | 2 | 12 | 2 | 0.036 |
| Â | G3 | 4605 | 1 | 1 | 2 | 0 | 0 | 0 | 4 | 0 | 4 | 3 | 0.029 |
| Â | G4 | 3856 | 0 | 5 | 0 | 2 | 3 | 1 | 11 | 0 | 11 | 6 | 0.100 |
| Â | G5 | 4856 | 0 | 5 | 0 | 1 | 2 | 1 | 9 | 0 | 9 | 6 | 0.063 |
| Â | G6 | 2042 | 1 | 1 | 0 | 1 | 0 | 0 | 3 | 1 | 2 | 3 | 0.006 |
| Â | Helena | 1317 | 2 | 1 | 1 | 1 | 2 | 0 | 7 | 0 | 7 | 5 | 0.097 |
| Â | HeT-A | 6083 | 0 | 0 | 0 | 0 | 0 | 3 | 3 | 0 | 3 | 0 | 0.018 |
| Â | I | 5371 | 7 | 5 | 6 | 3 | 5 | 2 | 28 | 8 | 20 | 9 | 0.037 |
| Â | Ivk | 5402 | 3 | 3 | 0 | 1 | 0 | 0 | 7 | 2 | 5 | 4 | 0.070 |
| Â | jockey | 5020 | 16 | 9 | 15 | 13 | 14 | 2 | 69 | 12 | 57 | 4 | 0.003 |
| Â | jockey2 | 3428 | 4 | 2 | 0 | 0 | 1 | 3 | 10 | 0 | 10 | 5 | 0.112 |
| Â | Juan | 4236 | 4 | 1 | 1 | 1 | 2 | 0 | 9 | 6 | 3 | 3 | 0.001 |
| Â | R1 | 5356 | 2 | 1 | 2 | 2 | 0 | 3 | 10 | 2 | 8 | 7 | 0.049 |
| Â | R2 | 3607 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - |
| Â | Rt1a | 5108 | 0 | 0 | 6 | 5 | 2 | 0 | 13 | 5 | 8 | 6 | 0.053 |
| Â | Rt1b | 5183 | 4 | 6 | 14 | 7 | 5 | 1 | 37 | 5 | 32 | 22 | 0.095 |
| Â | Rt1c | 5443 | 11 | 2 | 2 | 1 | 0 | 1 | 17 | 1 | 16 | 14 | 0.177 |
| Â | TART | 10654 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | - |
| Â | X | 4740 | 3 | 8 | 4 | 8 | 2 | 0 | 25 | 6 | 19 | 12 | 0.049 |
TIR | 1360 | 1177 | 10 | 18 | 16 | 20 | 11 | 30 | 105 | 10 | 95 | 48 | 0.087 |
| Â | Bari1 | 1728 | 0 | 1 | 1 | 0 | 2 | 1 | 5 | 5 | 0 | 0 | 0.002 |
| Â | Bari2 | 1064 | 0 | 2 | 0 | 0 | 1 | 1 | 4 | 1 | 3 | 3 | 0.043 |
| Â | HB | 1653 | 5 | 7 | 6 | 3 | 7 | 4 | 32 | 5 | 27 | 21 | 0.114 |
| Â | H | 2959 | 5 | 11 | 2 | 1 | 5 | 0 | 24 | 1 | 23 | 3 | 0.069 |
| Â | hopper | 1435 | 5 | 2 | 3 | 2 | 3 | 0 | 15 | 11 | 4 | 6 | 0.048 |
| Â | hopper2 | 1680 | 0 | 3 | 0 | 2 | 0 | 0 | 5 | 1 | 4 | 0 | 0.042 |
| Â | looper1 | 1881 | 1 | 0 | 0 | 0 | 2 | 0 | 3 | 0 | 3 | 2 | 0.048 |
| Â | mariner2 | 912 | 5 | 5 | 2 | 2 | 0 | 3 | 17 | 4 | 13 | 13 | 0.144 |
| Â | NOF | 4347 | 2 | 0 | 2 | 2 | 1 | 0 | 7 | 0 | 7 | 4 | 0.013 |
| Â | P | 2907 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - |
| Â | pogo | 2121 | 9 | 12 | 5 | 7 | 11 | 0 | 44 | 5 | 39 | 5 | 0.020 |
| Â | S | 1736 | 9 | 4 | 11 | 11 | 12 | 4 | 51 | 14 | 37 | 27 | 0.079 |
| Â | S2 | 1735 | 1 | 3 | 3 | 3 | 2 | 1 | 13 | 0 | 13 | 8 | 0.268 |
| Â | Tc1 | 1666 | 2 | 1 | 4 | 1 | 2 | 11 | 21 | 1 | 20 | 7 | 0.085 |
| Â | transib1 | 2167 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 0 | 2 | 2 | 0.000 |
| Â | transib2 | 2844 | 3 | 5 | 2 | 2 | 0 | 0 | 12 | 0 | 12 | 6 | 0.082 |
| Â | transib3 | 2883 | 0 | 1 | 1 | 1 | 1 | 3 | 7 | 0 | 7 | 4 | 0.088 |
| Â | transib4 | 2656 | 2 | 1 | 2 | 0 | 0 | 0 | 5 | 1 | 4 | 4 | 0.152 |
FB | FB | 1492 | 12 | 4 | 2 | 8 | 4 | 2 | 32 | 13 | 19 | 13 | 0.066 |