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Table 2 Example of PEP-QC output

From: An integrated computational pipeline and database to support whole-genome sequence annotation

Peptide position

SPTRREAL position

Discrepancy description

M1

M1..E88

Amino-terminal insertion: Q960X8 contains an additional stretch of 88 amino acids

CG2903-PB

Q960X8

 

M163

K163

Internal substitution of one amino acid

CG2903-PB

Q960X8

 

G1533..D1537

P1580..Q1589

Carboxy-terminal replacement of five amino acids with 10 amino acids

CG2903-PB

Q960X8

 
  1. For each discrepancy we show the sequence affected and the position on the sequence for both Gadfly and SWISS-PROT peptides. The peptide sequence identifiers are in bold.