Skip to main content

Table 3 Scaffold, contig and gap statistics for the three assemblies

From: Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogastereuchromatic genome sequence

 

WGS1

WGS2

WGS3

Number of scaffolds

816

2,198

2,775

Total Mb spanned

122.92

133.47

137.6

Total Mb of sequence

119.52

129.12

132.94

N50 scaffold length (Mb)

10.70

14.26

13.68

Number of gaps

2,926

5,319

4,936

Number of intra-scaffold gaps

2,110

3,121

2,161

Mean contig length (kb)

40.8

24.3

26.9

Mean gap length (bp)

1,611

1,395

2,190