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Table 3 Enhancer binding proteins (EBPs) of different members of the Rhizobiales

From: Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales

  Re NGR Bj R7A Ml Sm At Bm
NtrC      Mlr0389 (14021374) SMc01043 (15074392) Atu1446 (17739866) BmeI0866 (17987149)
NtrX      Mlr0400 (14021376) SMc01045 (15074394) Atu1448 (17739869) BmeI0868 (17987151)
DctD-1     Msi357 (20804186) Mlr5842 (14025622) SMb20613 (15141413) Atu3296 (17741681)  
DctD-2      Mlr7239 (14026791) SMb21200 (15140751) Atu0114 (17738434)  
NifA RE1SP0000735 (21492735) Y4uN (16519979) ID736 (12620732) Msi346 (20804175) Mll5857 (14025634) SMa0815 (14523538)   
     Msi361 (20804190) Mll5837 (14025617)    
EBP-1      Mll3001 (14023386) SMc04011 (15075819) Atu3764 (17742191) BmeII0011 (17988355)
EBP-2       SMb20102 (15139974) Atu4741 (17743247)  
EBP-3   Y4pA (16519894) ID407 (12620599)   Mll9384 (14028438)    
  1. EBPs were predicted using HMMER 2.2 g (see Materials and methods). The species acronyms are as in Table 2. Orthologs (having at least 30% amino-acid identity over the full length of the polypeptide) are situated on the same row (GenBank GI number). EBP-n: uncharacterized EBPs.