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Table 6 Mean scores for physiologic RSS and non-RSS segments in genomic sequence

From: Identification and utilization of arbitrary correlations in models of recombination signal sequences

    

Mean scores

    

WM0

WM1

RIC

Accession

Length (bp)

RSS type

Number of RSS

Non-RSS

RSS

Non-RSS

RSS

Non-RSS

RSS

AE000665

199101

Dβ, Jβ 12-RSS

15

-58.36

-32.13

-53.16

-27.73

-59.87

-28.48

AF018146

3926

DH 12-RSS

2

-59.05

-18.4

-52.84

-17.41

-60.08

-14.58

X58411

7360

Jλ1, Jλ3, 12-RSS

2

-57.63

-23.04

-52.51

-22.33

-58.91

-20.46

X58414

5867

Jλ2, Jλ4, 12-RSS

2*

-58.67

-26.01

-53.04

-26.91

-60.04

-22.58

AE000663

250611

Vβ 23-RSS

16†

-70.77

-39.88

-73.42

-34.6

-77.75

-34.17

AE000665

199101

Dβ, Jβ 23-RSS

2

-70.8

-35.21

-73.2

-37.23

-77.81

-38.64

  1. Location of physiologic RSS by their RIC score. Scores were computed for all 28- and 39-bp segments in mouse sequences containing physiologic RSS. The sequence accession number, its length and the physiologic RSS it contains are shown. The mean score for all non-RSS in the sequence is compared to the mean score for physiologic RSS associated with functional gene segments. *The Jλ4 gene segment is a pseudogene. †Seven of the 16 Vβ gene segments are pseudogenes.