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Table 6 Mean scores for physiologic RSS and non-RSS segments in genomic sequence

From: Identification and utilization of arbitrary correlations in models of recombination signal sequences

     Mean scores
     WM0 WM1 RIC
Accession Length (bp) RSS type Number of RSS Non-RSS RSS Non-RSS RSS Non-RSS RSS
AE000665 199101 Dβ, Jβ 12-RSS 15 -58.36 -32.13 -53.16 -27.73 -59.87 -28.48
AF018146 3926 DH 12-RSS 2 -59.05 -18.4 -52.84 -17.41 -60.08 -14.58
X58411 7360 Jλ1, Jλ3, 12-RSS 2 -57.63 -23.04 -52.51 -22.33 -58.91 -20.46
X58414 5867 Jλ2, Jλ4, 12-RSS 2* -58.67 -26.01 -53.04 -26.91 -60.04 -22.58
AE000663 250611 Vβ 23-RSS 16 -70.77 -39.88 -73.42 -34.6 -77.75 -34.17
AE000665 199101 Dβ, Jβ 23-RSS 2 -70.8 -35.21 -73.2 -37.23 -77.81 -38.64
  1. Location of physiologic RSS by their RIC score. Scores were computed for all 28- and 39-bp segments in mouse sequences containing physiologic RSS. The sequence accession number, its length and the physiologic RSS it contains are shown. The mean score for all non-RSS in the sequence is compared to the mean score for physiologic RSS associated with functional gene segments. *The Jλ4 gene segment is a pseudogene. Seven of the 16 Vβ gene segments are pseudogenes.