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Table 5 Frequency of above-threshold scores for non-RSS

From: Identification and utilization of arbitrary correlations in models of recombination signal sequences

    Number of physiologic RSS scoring below the indicated score
    0 1 2 3 4 5 6 7 8 9 10
12-RSS RIC Score -48.16 -45.81 -38.81 -38.81 -38.21 -37.77 -37.48 -36.03 -36 -35.01 -34.44
   Count 859 449 54 54 48 40 34 16 16 10 10
   Frequency 0.00414 0.00212 0.00025 0.00025 0.00023 0.00019 0.00016 0.00008 0.00008 0.00005 0.00005
  WM1 Score -46.32 -40.87 -37.75 -37.6 -36.33 -35.29 -34.63 -33.73 -32.73 -32.73 -32.69
   Count 2372 458 169 161 76 43 35 22 12 12 12
   Frequency 0.01118 0.00216 0.00080 0.00076 0.00036 0.00020 0.00017 0.00010 0.00006 0.00006 0.00006
  WM0 Score -46.86 -44.61 -42.83 -39.33 -39.06 -38.58 -38.58 -35.23 -34.59 -34.45 -34.21
   Count 1067 632 405 115 99 83 83 30 19 17 15
   Frequency 0.00503 0.00298 0.00191 0.00054 0.00047 0.00039 0.00039 0.00014 0.00009 0.00008 0.00007
23-RSS RIC Score -69.69 -66.37 -64.84 -58.45 -57.45 -57.41 -55.61 -54.35 -54.3   
   Count 2460 1147 791 100 71 69 37 26 26   
   Frequency 0.01160 0.00541 0.00373 0.00047 0.00033 0.00033 0.00017 0.00012 0.00012   
  WM1 Score -65.24 -63.84 -57.58 -54.55 -54.52 -54.16 -52.96 -52.55 -48.5   
   Count 3126 2309 471 190 189 167 109 97 14   
   Frequency 0.01474 0.01089 0.00222 0.00090 0.00089 0.00079 0.00051 0.00046 0.00007   
  WM0 Score -63.22 -61.52 -58.9 -58.74 -56.46 -56.46 -55.91 -52.41 -52.17   
   Count 2481 1691 816 777 365 365 317 82 72   
   Frequency 0.01170 0.00797 0.00385 0.00366 0.00172 0.00172 0.00149 0.00039 0.00034   
  1. Scores for physiologic RSS were ranked in ascending order so that the lowest score was ranked 0, the second lowest score was ranked 1, and so on. For each score, the number of physiologic RSS with a lower score is equal to this rank. We took the lowest 5% of scores under each model as the test thresholds for that model: ranks 0 through 10 were used for the three 12-RSS models and ranks 0 through 8 were used for the three 23-RSS models. For each of these threshold scores, we counted the number of non-RSS in the chromosome 8 sequence AC084823 that scored above the threshold. The threshold score, the count, and its relative frequency are shown.