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Table 4 Distribution of scores for non-RSS DNA and a pseudorandom string of A, G, C and T

From: Identification and utilization of arbitrary correlations in models of recombination signal sequences

  28-bp segments
Score level Chromosome 8 DNA Pseudorandom string
  WM0 WM1 RIC WM0 WM1 RIC
0 0 0 0 0 0 0
-5 0 0 0 0 0 0
-10 0 0 0 0 0 0
-15 0 0 0 0 0 0
-20 0 0 0 0 0 0
-25 1 3 1 0 1 1
-30 26 36 6 8 10 3
-35 154 298 68 75 92 23
-40 521 1335 245 287 586 180
-45 1426 3730 1152 1121 2082 719
-50 2878 5978 2572 2352 4230 1856
-55 4380 4485 4429 3627 4458 3384
-60 4415 1414 4730 3552 2076 3837
-65 2669 193 2935 2144 429 2716
-70 861 7 1135 705 33 1052
-75 136 1 189 119 1 208
-80 12 0 18 8 0 19
-85 1 0 0 0 0 0
-90 0 0 0 0 0 0
-95 0 0 0 0 0 0
-100 0 0 0 0 0 0
-∞ 194621 194621 194621 198104 198104 198104
Total 212101 212101 212101 212102 212102 212102
Maximum -28.62 -25.09 -29.03 -30.04 -27.51 -31.44
Mean -58.9 -52.64 -60.07 -59.18 -54.81 -61.13
Minimum -85.62 -75.54 -83.66 -82.19 -75.42 -84.68
  39-bp segments
Score level Chromosome 8 DNA Pseudorandom string
  WM0 WM1 RIC WM0 WM1 RIC
0 0 0 0 0 0 0
-5 0 0 0 0 0 0
-10 0 0 0 0 0 0
-15 0 0 0 0 0 0
-20 0 0 0 0 0 0
-25 0 0 0 0 0 0
-30 0 0 0 0 0 0
-35 0 0 0 0 0 0
-40 1 3 0 2 1 0
-45 22 26 3 10 5 1
-50 206 182 28 124 20 14
-55 919 681 148 600 162 80
-60 2433 2079 651 1876 673 409
-65 4421 3689 1785 3690 1701 1197
-70 5069 4544 3500 4079 3006 2588
-75 3073 3536 4509 2549 3520 3611
-80 1151 1907 3983 907 2880 3370
-85 170 680 2052 150 1452 1955
-90 13 124 676 8 464 617
-95 0 23 131 1 94 141
-100 0 4 12 0 18 13
-∞ 194612 194612 194612 198095 198095 198095
Total 212090 212090 212090 212091 212091 212091
Maximum -41.85 -43.13 -46.77 -42.79 -42.16 -47.65
Mean -70.49 -72.28 -77.76 -70.73 -76.94 -78.64
Minimum -92.37 -101.2 -103.03 -95.21 -104.23 -104.32
  1. A pseudorandom string of A, G, C and T was generated the same length as sequence AC084823 from chromosome 8 and having the same nucleotide-usage frequencies. The 12-RSS models scored all 28-bp segments and the 23-RSS models scored all 39-bp segments. The distribution of scores is shown. The number of segments not beginning with CA is shown at score level -∞ ;other details as in Table 3.