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Table 10 Most frequently clustered genes in DLBC lymphoma discrimination

From: Supervised clustering of genes

Numbers

    
 

Gene 3786

Gene 3804

Gene 761

Gene 780

Gene 3763

184 (301)

68 (220)

144 (155)

173 (133)

Gene 3786

 

289 (187)

153 (132)

72 (113)

Gene 3804

  

136 (96)

60 (83)

Gene 761

   

40 (58)

p-values

    
 

Gene 3786

Gene 3804

Gene 761

Gene 780

Gene 3763

(-) 0.000

(-) 0.000

(-) 0.359

(+) 0.001

Gene 3786

 

(+) 0.000

(+) 0.055

(-) 0.000

Gene 3804

  

(+) 0.000

(-) 0.007

Gene 761

   

(-) 0.015

  1. The top part of the table gives the numbers of observed and (in parentheses) expected (under the hypothesis of independence) gene pairs of the five most frequently clustered genes in the discrimination of DLBC lymphoma from the other two phenotypes, based on 1,000 bootstrap replicates. In the bottom part of the table, p-values for attraction (+) and repulsion (-) of gene pairs from two-sided binomial tests that compare the joint probability against the product of the marginals are shown.
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Genome Biology

ISSN: 1474-760X

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