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Table 10 Most frequently clustered genes in DLBC lymphoma discrimination

From: Supervised clustering of genes

Numbers     
  Gene 3786 Gene 3804 Gene 761 Gene 780
Gene 3763 184 (301) 68 (220) 144 (155) 173 (133)
Gene 3786   289 (187) 153 (132) 72 (113)
Gene 3804    136 (96) 60 (83)
Gene 761     40 (58)
p-values     
  Gene 3786 Gene 3804 Gene 761 Gene 780
Gene 3763 (-) 0.000 (-) 0.000 (-) 0.359 (+) 0.001
Gene 3786   (+) 0.000 (+) 0.055 (-) 0.000
Gene 3804    (+) 0.000 (-) 0.007
Gene 761     (-) 0.015
  1. The top part of the table gives the numbers of observed and (in parentheses) expected (under the hypothesis of independence) gene pairs of the five most frequently clustered genes in the discrimination of DLBC lymphoma from the other two phenotypes, based on 1,000 bootstrap replicates. In the bottom part of the table, p-values for attraction (+) and repulsion (-) of gene pairs from two-sided binomial tests that compare the joint probability against the product of the marginals are shown.