Table 2 Divergent genes of Helicobacter pylori strains
From: Improved analytical methods for microarray-based genome-composition analysis
Strain | Number of divergent genes found in the original publication [11] | Number of divergent genes found by our constant-cutoff reanalysis | Number of divergent genes found by GACK trinary analysis | Difference between GACK and [11] |
|---|---|---|---|---|
SS1 | 175 | 171 | 174 | -1 |
G50 | 143 | 141 | 136 | -7 |
SPM-314 | 117 | 114 | 161 | 44 |
H34 | 193 | 192 | 202 | 9 |
J99 | 130 | 130 | 161 | 31 |
AR32 | 122 | 122 | 158 | 36 |
SPM-292 | 190 | 188 | 208 | 18 |
26695 | 87 | 86 | 88 | 1 |
87A300 | 156 | 153 | 225 | 69 |
G27 | 147 | 148 | 164 | 17 |
NCTC11638 | 136 | 135 | 127 | -9 |
SPM-342 | 164 | 166 | 185 | 21 |
SPM-326 | 129 | 130 | 190 | 61 |
G39 | 151 | 142 | 162 | 11 |
HP1 | 137 | 135 | 188 | 51 |
Mean | 145 | 144 | 169 | 23 |