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Table 2 List of genes used to illustrate the technique and their abbreviations

From: Mining microarray expression data by literature profiling

Abbreviation

Gene name

ABCB2

ATP-binding cassette, subfamily B (MDR/TAP), member 2

AK3

Adenylate kinase 3

B2M

Beta-2-microglobulin

BIRC3

Baculoviral IAP repeat-containing 3

CFLAR

CASP8 and FADD-like apoptosis regulator

DUSP1

Dual specificity phosphatase 1

DUSP4

Dual specificity phosphatase 4

DUSP5

Dual specificity phosphatase 5

G1P3

Interferon, alpha-inducible protein (clone IFI-6-16)

GADD45A

Growth arrest and DNA-damage-inducible, alpha

GADD45B

Growth arrest and DNA-damage-inducible, beta

GBP1

Guanylate binding protein 1, interferon-inducible, 67kD

GCH1

GTP cyclohydrolase 1

H2AFO

H2A histone family, member O

HLA-F

Major histocompatibility complex, class I, F

IFIT

Interferon-induced protein with tetratricopeptide repeats

IFITM

Interferon induced transmembrane protein

IL15R

Interleukin 15 receptor

IL7R

Interleukin 7 receptor

IP10

Interferon induced protein 10

IP9

Interferon induced protein 9

IRF4

Interferon regulatory factor 4

IRF7

Interferon regulatory factor 7

ISG15

Interferon-stimulated protein, 15 kDa

ISG20

Interferon stimulated gene (20kD)

MCP2

Monocyte chemotactic protein 2

MCP3

Monocyte chemotactic protein 3

MIG

Monokine induced by gamma interferon

MIP3A

Macrophage inflammatory protein 3 alpha

MMP9

Matrix metalloproteinase 9

MT1A

Metallothionein 1A (functional)

MX1

Myxovirus (influenza) resistance 1

MX2

Myxovirus (influenza) resistance 2

NFKB1

Nuclear factor kappaB 1 (p105)

NFKB2

Nuclear factor kappaB2 (p49/p100)

NFKBIA

Nuclear factor kappaB inhibitor, alpha

NR4A3

Nuclear receptor subfamily 4, group A, member 3 (NOR1)

NRP2

Neuropilin 2

OAS

2'-5'-oligoadenylate synthetase

PDE4B

Phosphodiesterase 4B, cAMP-specific

PSMA

Proteasome (prosome, macropain) subunit, alpha

PSME

Proteasome activator subunit 2 (PA28)

PTP1B

Protein tyrosine phosphatase 1B

RANTES

RANTES

SOD2

Superoxide dismutase 2, mitochondrial

STAT1

Signal transducer and activator of transcription 1, 91kD

STAT4

Signal transducer and activator of transcription 4

TNFAIP3

Tumor necrosis factor, alpha-induced protein 3

TNFAIP6

Tumor necrosis factor, alpha-induced protein 6

TRAF1

TNF receptor-associated factor 1

VEGF

Vascular endothelial growth factor

  1. The genes for which a sufficient number of abstracts could be retrieved are listed. For the complete list of co-induced genes and ESTs included in the analysis, see Additional data files.