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Table 2 Non-rice RTs used in phylogenies

From: Long terminal repeat retrotransposons of Oryza sativa

Name of retrotransposon

Accession number

Host organism

Opie-2

T04112

Z. mays

Hopscotch

T02087

Z. mays

Fourf

AAK73108

Z. mays

Sto-4

T17429

Z. mays

Zmr-1 *

S27768

Z. mays

Endovir1-1

AAG52949

A. thaliana

Ta1-2

S23315

A. thaliana

Atr-1 *

NP_175303

A. thaliana

Atr-2 *

T01860

A. thaliana

Atr-3 *

NP_178752

A. thaliana

Atr-4 *

NP_174802.1

A. thaliana

Atr-5 *

AAF13073.1

A. thaliana

Atr-6 *

NP_179047

A. thaliana

Retrosor1

AAD19359

Sorghum bicolor

Retrosor3

AAD22153

S. bicolor

Daniela

AF326781†

Triticum aestivum

Acr-1 *

CAA73042

Ananas comosus

  1. *Previously unnamed RT found by BLAST searches of the GBRD, using rice RTs found in our study as queries. Acr, Ananas comosus retrotransposon; Atr, A. thaliana retrotransposon; Zmr, Z. mays retrotransposon.