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Table 1 ADI, PM, MM and signal-to-noise ratio (data not normalized)

From: Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip®arrays

  

Prokaryotic targets only

Fixed eukaryotic background

  

ADI

PM

MM

ADI/MM

ADI

PM

MM

ADI/MM

DapX_M

10 nM

19919.75

35677.5

15757.8

1.264104

19202

33809.95

14608.25

1.314463

 

1 nM

19021

28886.78

9865.59

1.927983

18687.25

26908.9

8221.955

2.272848

 

100 pM

15123.25

19903.23

4780.035

3.16386

8037

11747.13

2860.618

2.809533

 

10 pM

4450.5

5747.473

1296.938

3.43138

1307.25

2457.7

1256.453

1.040429

 

1 pM

475.25

1003.974

528.7788

0.898818

152.75

908.6613

960.415

0.159046

 

0.1 pM

53

555.3025

500.4675

0.105894

61.75

789.3088

963.1375

0.064113

LysX_5

10 nM

22589.25

32681.15

10091.97

2.238332

22421.25

31153.3

8732.253

2.567636

 

1 nM

18822.5

25673.68

6851.14

2.747309

16307.25

21212.53

4905.173

3.3245

 

100 pM

14646.25

18662.85

4016.605

3.646521

6483.75

9066.755

1873.723

3.460357

 

10 pM

4277

5444.548

1167.745

3.663383

970.25

1887.703

816.94

1.187664

 

1 pM

393.75

942.0425

512.4125

0.768668

102.25

764.4975

662.2375

0.154401

 

0.1 pM

47

550.8263

500.82

0.093859

11.5

683.4175

681.955

0.016863

PheX_3

10 nM

16341

39198.5

22857.5

0.714908

16647.5

38609.2

21961.6

0.758028

 

1 nM

17515.5

35193.4

17677.73

0.990822

19560.25

32962.05

13401.65

1.45954

 

100 pM

19859.25

31405.65

12039.89

1.649474

13262.75

18867.58

5088.875

2.606224

 

10 pM

9842

14063.93

3625.85

2.714473

2404.75

4105.543

1517.398

1.584785

 

1 pM

1242.25

2125.22

789.3375

1.573464

230.75

1162.27

884.2738

0.260949

 

0.1 pM

156.25

683.4025

527.1663

0.29649

2.25

881.4363

859.7225

0.002617

ThrX_5

10 nM

21092.25

38711.13

17618.83

1.197148

21321.75

37907.63

16585.88

1.285536

 

1 nM

20334.75

32740.03

12405.41

1.639205

20344.25

30814.2

10469.95

1.943109

 

100 pM

16992.5

24897.65

7905.4

2.149453

10744.75

14774.15

4029.59

2.666462

 

10 pM

5183.75

7391.858

2208.143

2.347713

1716

3056.805

1341.128

1.27952

 

1 pM

567.5

1181.16

613.6475

0.92502

211.5

1026.143

840.3225

0.251689

 

0.1 pM

61.5

577.555

517.4338

0.118841

29.5

847.0175

822.4388

0.035869