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Table 1 Metabolite facilitators (MIP, AQP, WCH) in the genome of Arabidopsis thaliana (Columbia)

From: From genome to function: the Arabidopsis aquaporins

 

Name*

Synonyms†

Chromosome

BAC/TAC /P1‡

Initiation codon

Protein acession no.

Sequence deduced from

cDNA§

PIP

PIP1;1

PIP1a

3

F2A19

27798

CAB71073

Genomic

P43285 (PIP1a)

 

PIP1;2

PIP1b, TMPA

2

F4I18

87924

AAC28529

Genomic

Q06611(TMPA), CAB37860 (PIP1b)

 

PIP1;3

PIP1c, TMPB

1

F22L4

63093

AAF811320

Genomic

S44083 (PIP1c), AAK15545 (TMPB)

 

PIP1;4

TMPC

4

F5I10

85662

AAF02782

Genomic

BAA05654 (TMPC)

 

PIP1;5

 

4

F16G20

32842

T05378

Genomic

 
 

PIP2:1

PIP2a

3

F4P12

46124

CAB67649

Genomic

P43286 (PIP2a)

 

PIP2;2,

TMB2b/PIP2b

2

T2N18

57871

AAD18142

Genomic

PIP2b (P43287), AAD18142(TMP2B)

 

PIP2;3

TMP2C, RD28

2

T2N18

62026

AAD18141

Genomic

P30302 (TMP2C), BAA02520 (RD28)

 

PIP2;4

 

5

MUP24

18875

BAB09839

Genomic

 
 

PIP2;5

 

3

F28P10

83540

T06738

Genomic

 
 

PIP2;6

 

2

T7F6

64373

AAC79629

Genomic

 
 

PIP2;7

PIP3, SIMIP

4

M4E13

64485

CAA17774

Genomic

AAB36949 (PIP3), AAB65787 (SIMIP)

 

PIP2;8

 

2

F12A24

8855

AAC64216

Genomic

 

TIP

TIP1;1

γ-TIP, RB7

2

T1J8

4486

AAD31569

Genomic

P25818, CAA51171 (γ-TIP), P21652 (RB7)

 

TIP1;2

SITIP, γ-TIP2

3

MFE16

15364

BAB01832

Genomic

AAB62692 (SITIP), AAC62397 (γ-TIP2)

 

TIP1;3

 

4

F11O4

55162

T01947

Genomic

 
 

TIP2;1

δ-TIP

3

MYA6

18398

BAB01264

cDNA

AAC49281 (δ-TIP)

 

TIP2;2

 

4

FCA contig 8

64089

F71442

Genomic

 
 

TIP2;3

 

5

MNJ7

6453

BAB09071

Genomic

 
 

TIP2;x

 

1

F9I5

12301

AAF29403

Genomic

 
 

pseudo

       
 

TIP3;1

α-TIP

1

T18K17

44536

AAF18716

cDNA

P26587 (α-TIP)

 

TIP3;2

β-TIP

1

F2H15

11220

AAF97261

Genomic

 
 

TIP4;1

 

2

F17H15

38691

AAC42249

Genomic

 
 

TIP5;1

 

3

T21L8

81475

T12999

Genomic

 

NIP

NIP1;1

NLM1

4

F13C5

88127

CAA16760

cDNA

CAA68906 (NLM1)

 

NIP1;2

NLM2

4

F13C5

31021

T05028

Genomic

CAC14597 (NLM2)

 

NIP2;1

 

2

T31E10

4448

T02327

Genomic

 
 

NIP2;1

 

2

F6K5

83258

AAC35214

Genomic

 
 

pseudo

       
 

NIP3;1

 

1

F5M6

37156

AAG31308

Genomic

 
 

NIP3;1

 

2

F7O24

20942

AAD29814

Genomic

 
 

pseudo

       
 

NIP4;1

 

5

K22F20

46984

BAB10360

Genomic

 
 

NIP4;2

 

5

K22F20

52013

BAB10361

Genomic

 
 

NIP5;1

 

4

F24G24

77092

T04053

Genomic

 
 

NIP6;1

 

1

F23A5

34623

AAF14664

Genomic

 
 

NIP7;1

 

3

F28L1

7581

AAF30303

Genomic

 

SIP

SIP1;1

 

3

T6K12

86673

AAF26804

Genomic

 
 

SIP1;2

 

5

MRG7

79913

BAB09487

Genomic

 
 

SIP2;1

 

3

F24I3

7654

CAB72165

Genomic

 
 

GLPF

 

E. coli

    

G11514194

 

CHIP28

 

human AQP1

    

XM004861

  1. *Name used in alignments (see Figure 1). †Other names in use; some sequences are from ecotypes other than Columbia. ‡BAC/TAC/P1 clone accession numbers. §Deduced from genome sequence.