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Table 3 Test sets

From: On the species of origin: diagnosing the source of symbiotic transcripts

Species Tissue Library (ID) Raw Trimmed Screened
    n nt n nt n nt
P. sojae Mycelia MY 969 527,295 902 510,010 895 506,086
P. sojae Zoospores ZO 1,013 583,520 960 569,576 957 567,976
+ G. max 2 dpi HA 994 577,626 938 563,226 927 556,305
M. truncatula Root hairs MtRHE 899 539,719 893 536,787 890 534,037
+ G. versiforme 10–38 dpi MHAM 3,259 1,785,721 3,030 1,735,390 3,017 1,725,491
+ P. medicaginis 10 dpi DSIR 2,462 1,324,815 2,289 1,287,568 2,284 1,282,518
M. truncatula Roots KV0 2,718 1,387,832 2,550 1,351,137 2,492 1,318,131
+ S. meliloti 1 dpi KV1 1,125 562,452 1,012 537,644 1,003 531,813
+ S. meliloti 2 dpi KV2 1,960 976,344 1,732 926,953 1,726 922,433
+ S. meliloti 3 dpi KV3 2,375 1,316,430 2,217 1,279,691 2,173 1,251,795
  1. Number of EST sequences (n) and nucleotides (nt) as raw, trimmed (limited lengths of N-rich regions, poly(A) and poly(T) sites), and screened (removed ribosomal, chloroplast, and mitochondrial DNA, and remaining sequences shorter than 300 nt) sequences. Transcripts were isolated from the cDNA library indicated by the ID column. dpi, days post-inoculation, indicating mixed plant-microbe cultures.