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Table 2 Training sets

From: On the species of origin: diagnosing the source of symbiotic transcripts

Taxon Raw Trimmed Screened
  n nt n nt n nt
Glycine 892 1,265,829 834 1,219,114 826 1,184,951
Medicago (A 2) 401 561,104 382 519,739 380 513,868
Total, plants (A 1)      1,206 1,698,819
Stramenopiles 199 299,113 184 287,600 181 279,900
P. infestans 2,131 1,219,463 2,102 1,209,113 2,082 1,199,372
Total, stramenopiles (B 1)      2,263 1,479,272
Zygomycetes 232 343,817 212 329,222 211 327,229
Chytridiomycetes 82 123,698 78 119,754 78 119,754
Total, Fungi (B 2)      289 446,983
Rhizobium 478 1,430,132 444 1,404,883 444 1,404,883
Sinorhizobium 320 900,294 312 898,687 312 898,687
Bradyrhizobium 153 471,309 146 465,307 146 465,307
Total, rhizobacteria (B 3)      902 2,768,877
  1. Number of sequences (n) and nucleotides (nt), as raw, trimmed (removed N-rich regions, poly(A) and poly(T) sites), and screened sequences (removed ribosomal, chloroplast, and mitochondrial DNA and remaining sequences shorter than 300 nucleotides).