Skip to main content

Table 1 Dissimilarity (D) comparison results from 50 validation sequences

From: On the species of origin: diagnosing the source of symbiotic transcripts

Accession Gene name mRNA (?) Length (nucleotides) D(A) plants D(B 1) oomycetes D(B 3) bacteria
Glomus versiforme       
   AJ009628 chitin synthase Gvchs1 n 638 2,535.2 2,468.6 2,718.4
   AJ009629 chitin synthase Gvchs2 n 481 2,203.2 2,050.0 2,286.0
   AJ009630 chitin synthase Gvchs3 n 4,116 7,205.9 5,235.8 5,985.8
   U38650 phosphate transporter y 1,833 3,937.9 5,702.3 6,514.3
Glycine max       
   J01297 actin SAc3 n 1,620 3,322.0 4,554.6 5,329.7
   K00821 lectin Le1 n 2,152 4,124.6 6,558.3 7,928.3
   M64267 iron superoxide dismutase y 1,056 2,773.6 3,761.2 4,269.2
Medicago truncatula       
   AF000354 phosphate transporter MtPT1 y 1,920 3,800.3 5,630.7 6,654.2
   AF000355 phosphate transporter MtPT2 y 1,867 3,673.9 5,390.1 6,424.0
   AF055921 Mt4 genomic sequence n 954 2,631.9 4,004.4 4,539.1
   AF106929 cell wall protein AM1 y 885 3,433.6 4,200.0 4,774.3
   AF106930 translation initiation protein AM3-1 y 3,154 4,557.6 5,982.7 7,212.8
   AF106931 translation initiation protein AM3-2 y 1,384 3,371.1 4,130.0 4,644.4
   AJ132891 ha1 gene, exons 1–22 n 3,620 4,383.2 8,683.6 10,730.7
   AJ388847 MtNo213 superoxide dismutase y 530 2,110.2 2,219.8 2,367.0
   AJ388865 MtNo233 triosephosphate isomerase y 563 2,171.6 2,405.6 2,618.6
   U16727 peroxidase precursor rip1 n 2,603 4,246.1 8,210.0 9,901.9
   U38651 sugar transporter y 1,728 3,619.6 5,128.4 5,976.5
   X57732 leghemoglobin Mtlb1 n 1,073 3,021.3 5,029.1 5,845.9
   X57733 leghemoglobin Mtlb2 n 592 2,045.9 3,156.0 3,568.2
   X60386 lectin lec1 n 1,363 3,228.8 4,935.4 5,605.6
   X60387 lectin lec2 n 1,192 3,142.8 4,472.6 4,985.9
   X82216 lec3 n 1,155 2,928.4 4,283.3 4,930.8
   X68032 ENOD12 n 772 2,780.4 3,679.7 4,096.5
   X99466 ENOD16 n 1,142 3,124.6 4,535.5 5,156.2
   X99467 ENOD20 n 1,405 4,003.6 5,294.7 5,966.7
   Y10267 glutamine synthetase y 1,413 3,116.1 4,506.5 5,292.1
   Y10373 chitinase y 1,305 3,369.5 4,090.4 4,703.4
Phytophthora infestans       
   AF004951 surface glycoprotein elicitor inf2A y 648 3,428.4 2,421.9 2,589.1
   AF004952 surface glycoprotein elicitor inf2B y 701 3,611.7 2,514.5 2,698.6
   L23938 ipiO2 n 1,556 4,125.2 4,339.5 4,855.5
   L23939 ipiO1 n 1,826 4,360.5 4,580.9 5,259.0
   L24206 ipiB1 n 1,726 6,086.7 4,584.3 5,159.3
   M59715 actin actA n 1,736 5,137.1 3,637.2 4,420.0
   M59716 actin actB n 1,405 4,425.3 3,569.5 4,141.6
   M83535 calmodulin calA n 1,358 4,063.0 3,724.9 4,138.1
   X64537 tigA n 2,448 6,221.0 4,193.8 5,181.9
P. capsici       
   U42304 chitin synthase chs n 449 2,238.8 1,882.7 1,997.5
P. parasitica       
   X97205 cellulose-binding-elicitor lectin y 918 3,819.1 2,876.0 3,208.4
Sinorhizobium meliloti       
   AF040724 nodD n 1,776 5,317.9 4,197.8 4,179.4
   AF110770 superoxide dismutase sodA n 1,196 4,898.2 3,343.2 2,916.0
   M61753 exoD n 858 4,071.8 2,847.2 2,372.9
   M68858 nodulation proteins nodP and nodQ n 3,476 9,992.3 5,288.0 3,954.7
   M96261 phosphate regulators phoU and phoB n 1,178 5,332.7 3,359.3 2,866.4
   U90221 syrA n 1,102 4,176.2 3,375.8 3,220.8
   X01649 nodA, nodB, and nodC n 3,373 7,684.1 4,819.5 4,646.1
   X03065 regulatory nitrogen fixation fixD n 2,111 5,723.0 4,249.8 4,228.3
   X17523 glutamine synthetase II n 990 4,303.5 2,959.9 2,720.4
   Y08500 putA n 3,804 13,623.3 6,376.5 4,212.0
Agrobacterium tumefaciens       
   U91632 sugar transporter gguA and membrane-spanning permeases gguB and gguC n 4,185 11,132.6 5,959.4 4,551.4
  sugar transporter gguA and membrane-spanning permeases gguB and gguC      
  1. Incorrect inferences are underlined.