Table 1 Genomes used in the present analysis
Organism name (strain) | Number of ORFs | ID |
|---|---|---|
Aeropyrum pernix (K1) | 2,694 | aerpe |
Aquifex aeolicus (VF5) | 1,522 | aquae |
Archaeoglobus fulgidus (DSM4304) | 2,409 | arcfu |
Bacillus subtilis (168) | 4,100 | bacsu |
Borrelia burgdorferi (B31) + plasmids | 1,639 | borbu |
Caenorhabditis elegans | 19,099 | caeel |
Chlamydia pneumoniae (CWL029) | 1,052 | chlpn |
Chlamydia trachomatis (serovar D) | 894 | chltr |
Drosophila melanogaster | 13,710 | drome |
Escherichia coli (K12-MG1655) | 4,290 | escco |
Haemophilus influenzae (KW20) | 1,707 | haein |
Helicobacter pylori (26695) | 1,577 | help2 |
Helicobacter pylori (J99) | 1,495 | helpj |
Methanococcus jannaschii (DSM 2661) | 1,773 | metja |
Methanobacterium thermoautotrophicum (delta) | 1,871 | metth |
Mycoplasma genitalium (G-37) | 479 | mycge |
Mycoplasma pneumoniae (M129) | 677 | mycpn |
Mycobacterium tuberculosis (H37Rv) | 3,924 | myctu |
Pyrococcus horikoshii (shinkaj OT3) | 2,061 | pyrho |
Rickettsia prowazekii (Madrid E) | 837 | ricpr |
Saccharomyces cerevisiae (S288C) | 6,305 | sacce |
Synechocystis sp. (PCC 6803) | 3,168 | synsp |
Thermotoga maritima (MSB8) | 1,849 | thema |
Treponema pallidum (Nichols) | 1,030 | trepa |