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Table 3 Log-likelihood analysis of possible placements of selected branches of maximum likelihood trees for the analyzed ribosomal proteins

From: Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins

Tree* Difference in log-likelihood Standard error RELL-BP§
L36 original 0.0 NA 0.7797
1→2 -45.7 11.8 0.0000
2→3 -29.1 10.9 0.0024
2→1 -42.7 10.9 0.0000
3→4 -3.1 3.6 0.2179
L31 original 0.0 NA 0.9949
1→2 -36.7 12.6 0.0007
2→1 -36.6 14.6 0.0044
S18 original 0.0 NA 0.9594
1→2 -6.7 3.9 0.0327
2→1 -20.3 8.9 0.0027
3→2 -16.7 7.1 0.0052
S18 original 0.0 NA 0.8344
4→5 -7.1 6.1 0.0838
5→4 -6.7 5.8 0.0818
L28 original 0.0 NA 0.9550
1→2 -18.9 10.5 0.0331
2→1 -19.3 9.4 0.0119
  1. *The numbers refer to local rearrangements of the tree as indicated on the corresponding figures. Difference of the log-likelihoods relative to the best tree. Standard error of difference in log-likelihood. §Bootstrap probability (BP) of the given tree calculated using the RELL method (resampling of estimated log-likelihoods) [44]). NA, standard error estimate is not applicable for the aximum likelihood tree.