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Table 1 Homology with mitochondrial DNA

From: Isolation, in silico characterization and chromosomal localization of a group of cDNAs from ciliated epithelial cells after in vitro ciliogenesis

Clone names

Homology to normal

Homologous

Homology to

Chromo-

Homologous

In between

Distance

 

database (identity),

region, extent

human clone

some

region, extent

markers

from P-tel

 

accession number

of similarity

(HTGS)

 

of similarity

 

(kb)

  

(bp)*, identity

accession

 

(bp)*, identity

  
  

(bp/bp)†

number

 

(bp/bp)†

  

34-18, 356 bp

L00016.1 Hs urf4

24-336, 313/313

AC021965

5

35-333, 271/299

D5S2400 &

124831

 

gene, mitochondrial

    

SHGC-141614

 
   

AC008670

5

24-145, 111/123

D5S2056 & AA007G12

82616

   

AC012363

2

80-246, 136/137

stSG60109 &

30855

      

RH120618

 

36-62, 100 bp

NC_001807.2 Hs

13-87, 74/76

AL160031

13

18-87, 70/71

D13S1223 & DD13s943

96955

 

mitochondrion

      
   

AC008670

5

30-77, 45/49

D5S2408 & EE8-Sp6

96746

5R22, 244 bp

NC_001807.2 Hs

19-224, 206/206

AC021965

5

19-217, 169/199

D5S2400 &

124831

 

mitochondrion

    

SHGC-141614

 
   

AC016571

5

13-269, 253/260

RH122707 & stSG3646

206852

36-105, 70 bp

NC_001807.2Hs

15-51, 31/36

NSH

NA

NA

NA

NA

 

mitochondrion

      

24-16, 215 bp

NC_001807 Hs

1-196, 195/196

AC021965

5

1-196, 178/196

D5S2400 &

124831

 

mitochondrion

    

SHGC-141614

 
   

AC018806

5

1-167, 151/167

D5S409 & H119908

90813

5R16, 56 bp

NC_001807 Hs

20-37, 18/18

AC055801

2

19-35, 16/16

RH112539 &

110180

 

mitochondrion

    

D2S2002

 
   

AC010290

5

37-53,17/17

G-7042470 &

171125

      

GDB:187625

 
   

AP000686 1

11

37-53,17/17

RH79933 & DD11S3991

176404

9625, 135 bp

NC_001807.2 Hs

16-64, 48/49

AC068619

17

35-114, 66/80

NMF

124848

 

mitochondrion

      

9639, 179 bp

NC_001807.2 Hs

13-169, 137/149

AC025380

X

55-140, 72/86

stSG9218 &

78184

 

mitochondrion

    

HSSTS293

 

6085, 111 bp

NC_001807 Hs

31-100, 69/70

AL359496

1

31-100, 68/70

NMF

NA

 

mitochondrion

      

36-16, 105 bp

NC_001807 Hs

24-82, 57/59

AC008670

5

27-82, 51/56

D5S2056 &

82616

 

mitochondrion

    

A007G12

 

36-100, 342 bp

NC_001807 Hs

36-175,140/140

AC024033

12

36-175, 140/140

stSG62230 &

73482

 

mitochondrion

172-320, 146/150

  

172-320, 146/150

RH47270

 
   

AC010270

5

36-175,140/140

D5S2408 & EE8-Sp6

96746

     

172-320, 146/150

  

36-34, 72 bp

NC_001807 Hs

18-55, 37/38

AC021914

11

21-52, 30/32

sTSG4656 &

26100

 

mitochondrion

    

sts-N93614

 

36-36, 87 bp

AF134583 Hs

19-67, 49/49

AL049739

6

26-46, 21/21

S78653 &

39448

 

mitochondrial

    

stSG46623

 
 

DNA-like

      

9694, 150 bp

L00016.1 Hs urf4

19-132, 114/114

AC021965

5

19-121, 95/103

D5S2400 &

124831

 

gene, mitochondrial

    

SHGC-141614

 

34-47, 103 bp

NC_001807.2 Hs

16-82, 67/67

AC022223

5

16-82, 67/67

RH12239 &

95113

 

mitochondrion

    

WI-18379

 
  1. *Extent of similarity, the number corresponds to the starting and ending base pair in the respective homologous gene with the EST. †Identity, the number corresponds to the identical base pair of EST/homologous gene. NA, not applicable; Hs, Homo sapiens; Dm, Drosophila melanogaster; Dr, Drosophila radiodurans. NSH, no significant homology (identity less than 20 bases); NMF, no matches found.
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