Category | Database | Total records | Percent placed (%) | Total unique exons | Exons in complete ORFs | Exons in partial ORFs | Exon length (bp) | ORF length (bp) | Putative genes (non-splicing singletons) | Protein homology (Pfam hits) | CpG islands |
---|---|---|---|---|---|---|---|---|---|---|---|
Known | UTR-DB | 40,258 | 80 | 19,195 | 5,075 | 1,895 | 6,925,762 | 1,990,818 | 10,007 (426) | 5,701 (3,813) | 3,866 |
genes | HTDB | 15,305 | 89 | 48,477 | 12,077 | 7,706 | 11,893,081 | 4,043,544 | 4,816 (148) | 2,938 (1,943) | 1,960 |
Consensus | HINT | 87,125 | 77 | 103,817 | 47,055 | 15,061 | 23,381,024 | 10,144,988 | 20,357 (959) | 9,121 (6,453) | 7,557 |
transcripts | EG | 62,064 | 80 | 13,085 | 5,389 | 1,904 | 4,562,954 | 1,873,723 | 4,800 (154) | 2,177 (1,679) | 2,462 |
 | THC | 84,837 | 81 | 38,806 | 15,463 | 6,671 | 12,406,081 | 5,078,661 | 8,604 (322) | 2,907 (2,026) | 3,983 |
Transcripts | GenBank CDS | 110,222 | 81 | 41,917 | 31,626 | 1,452 | 5,303,064 | 4,299,272 | 2,634 (227) | 1,858 (1,607) | 1,178 |
 | dbEST Human | 2,154,995 | 73 | 273,881 | 147,819 | 17,694 | 32,288,385 | 14,975,758 | 20,073 (7,136) | 5,377 (3,745) | 11,807 |
Rodent | MINT | 92,531 | 30 | 8,284 | 5,433 | 120 | 866,046 | 780,566 | 777 | 123 (56) | 486 |
transcripts | RINT | 37,367 | 46 | 5,600 | 3,588 | 75 | 592,788 | 546,932 | 458 | 65 (32) | 255 |
 | EMBL | 43,488 | 28 | 5,819 | 4,108 | 59 | 724,630 | 655,993 | 202 | 68 (72) | 135 |
Protein | SWISS-PROT | 86,593 | 38 | 27,526 | 12,072 | 1,163 | 9,858,797 | 7,784,205 | 1,648 | 1,648 (1,244) | 158 |
homology | TrEMBL | 351,834 | 13 | 22,670 | 8,134 | 1,677 | 4,385,497 | 2,886,034 | 1,185 | 1,185 (654) | 92 |
 | PIR | 182,106 | 16 | 4,106 | 1,175 | 383 | 1,355,644 | 764,339 | 321 | 321 (132) | 20 |
Total | Â | Â | Â | 613,183 | 299,014 | 55,860 | 114,543,753 | 55,824,833 | 75,982 (9,372) | 33,489 (23,008) | 33,959 |