From: Distinct gene expression profiles of human type 1 and type 2 T helper cells
Oligonucleotide | Real-time RT-PCR | ||||||||
---|---|---|---|---|---|---|---|---|---|
array | |||||||||
Preference | Gene | Fold difference | Fold difference | SD | SD | Fold | Statistical | ||
deltaCT (Th1) | deltaCT (Th2) | ||||||||
by microarray† | by real-time | (average of | (average of | difference† | significance§ | ||||
(individual 1)‡ | RT-PCR† | individuals | individuals | (average of | |||||
(individual 1)‡ | 1,2,3) | 1,2,3) | individuals 1,2,3) | ||||||
Th1 >Th2 | GM-CSF | 4.1 | 3.6 | 6.73 | 0.80 | 8.86 | 0.83 | 4.4 | ** |
TNF-α | 12.3 | 6.2 | 2.91 | 0.28 | 4.40 | 0.92 | 2.8 | ** | |
RANTES | 3.1 | 4.0 | 1.23 | 0.72 | 3.88 | 0.71 | 6.3 | ** | |
CCR1 | 5.1 | 122.0 | 7.18 | 0.85 | 12.73 | 1.95 | 46.7 | ** | |
CCR2 | 8.9 | 30.7 | 7.57 | 0.55 | 10.95 | 2.10 | 10.4 | ** | |
CCR5 | 1.9 | 109.0 | 10.64 | 0.46 | 15.08 | 1.92 | 21.7 | ** | |
IκB | 1.7 | 1.4 | 1.76 | 0.65 | 2.92 | 0.55 | 2.2 | ** | |
TIMP-1 | 6.6 | 1.2 | 3.39 | 0.48 | 3.48 | 0.80 | 1.1 | n.s. | |
Caspase-1 | 2.9 | 1.9 | 8.08 | 0.72 | 8.87 | 0.75 | 1.7 | ** | |
Clusterin | 2.4 | 1.4 | 3.50 | 0.60 | 4.02 | 0.12 | 1.4 | ** | |
Th2 >Th1 | IL-4R | 7.0 | 2.3 | 7.90 | 0.48 | 6.31 | 1.01 | 3.0 | n.s. |
FGFR | 3.8 | 1.9 | 10.10 | 0.53 | 9.35 | 0.18 | 1.7 | ** | |
CCR4 | 3.1 | 3.2 | 7.37 | 0.47 | 5.23 | 0.18 | 4.3 | ** | |
STAT4 | 1.8 | 1.7 | 7.07 | 0.43 | 6.06 | 0.55 | 2.0 | ** |