TY - STD TI - Phylogenetic classification of proteins encoded in complete genomes. [http://www.ncbi.nlm.nih.gov/COG/] UR - http://www.ncbi.nlm.nih.gov/COG/ ID - ref1 ER - TY - JOUR AU - Tatusov, R. L. AU - Galperin, M. Y. AU - Natale, D. A. AU - Koonin, E. V. PY - 2000 DA - 2000// TI - The COG database: a tool for genome-scale analysis of protein functions and evolution. JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.33 DO - 10.1093/nar/28.1.33 ID - Tatusov2000 ER - TY - CHAP AU - Walker, G. C. PY - 1996 DA - 1996// TI - The SOS response of Escherichia coli. BT - In Escherichia coli and Salmonella in Cellular and Molecular Biology, Vol 1. Edited by Neidhardt, FC. Washington DC: ASM Press; ID - Walker1996 ER - TY - JOUR AU - Winterling, K. W. AU - Chafin, D. AU - Hayes, J. J. AU - Sun, J. AU - Levine, A. S. AU - Yasbin, R. E. AU - Woodgate, R. PY - 1998 DA - 1998// TI - The Bacillus subtilisDinR binding site: redefinition of the consensus sequence. JO - J Bacteriol VL - 180 ID - Winterling1998 ER - TY - JOUR AU - Hecker, M. AU - Schumann, W. AU - Volker, U. PY - 1996 DA - 1996// TI - Heat-shock and general stress response in Bacillus subtilis. JO - Mol Microbiol VL - 19 UR - https://doi.org/10.1046/j.1365-2958.1996.396932.x DO - 10.1046/j.1365-2958.1996.396932.x ID - Hecker1996 ER - TY - JOUR AU - Segal, R. AU - Ron, E. Z. PY - 1996 DA - 1996// TI - Regulation and organization of the groE and dnaKoperons in Eubacteria. JO - FEMS Microbiol Lett VL - 138 UR - https://doi.org/10.1111/j.1574-6968.1996.tb08126.x DO - 10.1111/j.1574-6968.1996.tb08126.x ID - Segal1996 ER - TY - JOUR AU - Gelfand, M. S. PY - 1999 DA - 1999// TI - Recognition of regulatory sites by genomic comparison. JO - Res Microbiol VL - 150 UR - https://doi.org/10.1016/S0923-2508(99)00117-5 DO - 10.1016/S0923-2508(99)00117-5 ID - Gelfand1999 ER - TY - JOUR AU - Maas, W. K. PY - 1994 DA - 1994// TI - The arginine repressor of Escherichia coli. JO - Microbiol Rev VL - 58 ID - Maas1994 ER - TY - JOUR AU - Miller, C. M. AU - Baumberg, S. AU - Stockley, P. G. PY - 1997 DA - 1997// TI - Operator interactions by the Bacillus subtilisarginine repressor/activator, AhrC: novel positioning and DNA-mediated assembly of a transcriptional activator at catabolic sites. JO - Mol Microbiol VL - 26 UR - https://doi.org/10.1046/j.1365-2958.1997.5441907.x DO - 10.1046/j.1365-2958.1997.5441907.x ID - Miller1997 ER - TY - JOUR AU - Klingel, U. AU - Miller, C. M. AU - North, A. K. AU - Stockley, P. G. AU - Baumberg, S. PY - 1995 DA - 1995// TI - A binding site for activation by the Bacillus subtilisAhrC protein, a repressor/activator of arginine metabolism. JO - Mol Gen Genet VL - 248 UR - https://doi.org/10.1007/BF02191600 DO - 10.1007/BF02191600 ID - Klingel1995 ER - TY - JOUR AU - Rodriguez-Garcia, A. AU - Ludovice, M. AU - Martin, J. F. AU - Liras, P. PY - 1997 DA - 1997// TI - Arginine boxes and the argR gene in Streptomyces clavuligerus: evidence for a clear regulation of the arginine pathway. JO - Mol Microbiol VL - 25 UR - https://doi.org/10.1046/j.1365-2958.1997.4511815.x DO - 10.1046/j.1365-2958.1997.4511815.x ID - Rodriguez-Garcia1997 ER - TY - JOUR AU - Charlier, D. AU - Roovers, M. AU - Van Vliet, F. AU - Boyen, A. AU - Cunin, R. AU - Nakamura, Y. AU - Glansdorff, N. AU - Pierard, A. PY - 1992 DA - 1992// TI - Arginine regulon of Escherichia coli K-12. A study of repressor-operator interactions and of in vitro binding affinities versus in vivorepression. JO - J Mol Biol VL - 226 UR - https://doi.org/10.1016/0022-2836(92)90953-H DO - 10.1016/0022-2836(92)90953-H ID - Charlier1992 ER - TY - JOUR AU - Tian, G. AU - Lim, D. AU - Carey, J. AU - Maas, W. K. PY - 1992 DA - 1992// TI - Binding of the arginine repressor of Escherichia coliK12 to its operator sites. JO - J Mol Biol VL - 226 UR - https://doi.org/10.1016/0022-2836(92)90954-I DO - 10.1016/0022-2836(92)90954-I ID - Tian1992 ER - TY - JOUR AU - Maghnouj, A. AU - de Sousa Cabral, T. F. AU - Stalon, V. AU - Vander Wauven, C. PY - 1998 DA - 1998// TI - The arcABDC gene cluster, encoding the arginine deiminase pathway of Bacillus licheniformis, and its activation by the arginine repressor argR. JO - J Bacteriol VL - 180 ID - Maghnouj1998 ER - TY - JOUR AU - Wang, H. AU - Glansdorff, N. AU - Charlier, D. PY - 1998 DA - 1998// TI - The arginine repressor of Escherichia coliK-12 makes direct contacts to minor and major groove determinants of the operators. JO - J Mol Biol VL - 277 UR - https://doi.org/10.1006/jmbi.1998.1632 DO - 10.1006/jmbi.1998.1632 ID - Wang1998 ER - TY - JOUR AU - Stirling, C. J. AU - Szatmari, G. AU - Stewart, G. AU - Smith, M. C. AU - Sherratt, D. J. PY - 1988 DA - 1988// TI - The arginine repressor is essential for plasmid-stabilizing site-specific recombination at the CoIEI cer locus. JO - EMBO J VL - 7 ID - Stirling1988 ER - TY - JOUR AU - Guhathakurta, A. AU - Summers, D. PY - 1995 DA - 1995// TI - Involvement of ArgR and PepA in the pairing of CoIEI dimer resolution sites. JO - Microbiology VL - 141 UR - https://doi.org/10.1099/13500872-141-5-1163 DO - 10.1099/13500872-141-5-1163 ID - Guhathakurta1995 ER - TY - JOUR AU - Chen, S. H. AU - Merican, A. F. AU - Sherratt, D. J. PY - 1997 DA - 1997// TI - DNA binding of Escherichia coliarginine repressor mutants altered in oligomeric state. JO - Mol Microbiol VL - 24 UR - https://doi.org/10.1046/j.1365-2958.1997.4301791.x DO - 10.1046/j.1365-2958.1997.4301791.x ID - Chen1997 ER - TY - JOUR AU - Berg, O. G. PY - 1988 DA - 1988// TI - Selection of DNA binding sites by regulatory proteins: the LexA protein and the arginine repressor use different strategies for functional specificity. JO - Nucleic Acids Res VL - 16 UR - https://doi.org/10.1093/nar/16.11.5089 DO - 10.1093/nar/16.11.5089 ID - Berg1988 ER - TY - JOUR AU - Smith, M. C. AU - Czaplewski, L. AU - North, A. K. AU - Baumberg, S. AU - Stockley, P. G. PY - 1989 DA - 1989// TI - Sequences required for regulation of arginine biosynthesis promoters are conserved between Bacillus subtilis and Escherichia coli. JO - Mol Microbiol VL - 3 UR - https://doi.org/10.1111/j.1365-2958.1989.tb00099.x DO - 10.1111/j.1365-2958.1989.tb00099.x ID - Smith1989 ER - TY - JOUR AU - Sanchez, R. AU - Roovers, M. AU - Glansdorff, N. PY - 2000 DA - 2000// TI - Organization and expression of a Thermus thermophilusarginine cluster: presence of unidentified open reading frames and absence of a Shine-Dalgarno sequence. JO - J Bacteriol VL - 182 UR - https://doi.org/10.1128/JB.182.20.5911-5915.2000 DO - 10.1128/JB.182.20.5911-5915.2000 ID - Sanchez2000 ER - TY - JOUR AU - Soutar, A. AU - Baumberg, S. PY - 1996 DA - 1996// TI - Implication of a repression system, homologous to those of other bacteria, in the control of arginine biosynthesis genes in Streptomyces coelicolor. JO - Mol Gen Genet VL - 251 ID - Soutar1996 ER - TY - JOUR AU - Savchenko, A. AU - Charlier, D. AU - Dion, M. AU - Weigel, P. AU - Hallet, J. N. AU - Holtham, C. AU - Baumberg, S. AU - Glansdorff, N. AU - Sakanyan, V. PY - 1996 DA - 1996// TI - The arginine operon of Bacillus stearothermophilus : characterization of the control region and its interaction with the heterologous B. subtilisarginine repressor. JO - Mol Gen Genet VL - 252 UR - https://doi.org/10.1007/BF02173206 DO - 10.1007/BF02173206 ID - Savchenko1996 ER - TY - JOUR AU - Dion, M. AU - Charlier, D. AU - Wang, H. AU - Gigot, D. AU - Savchenko, A. AU - Hallet, J. N. AU - Glansdorff, N. AU - Sakanyan, V. PY - 1997 DA - 1997// TI - The highly thermostable arginine repressor of Bacillus stearothermophilus: gene cloning and repressor-operator interactions. JO - Mol Microbiol VL - 25 UR - https://doi.org/10.1046/j.1365-2958.1997.4781845.x DO - 10.1046/j.1365-2958.1997.4781845.x ID - Dion1997 ER - TY - JOUR AU - Lu, C. D. AU - Abdelal, A. T. PY - 1999 DA - 1999// TI - Role of ArgR in activation of the ast operon, encoding enzymes of the arginine succinyltransferase pathway in Salmonella typhimurium. JO - J Bacteriol VL - 181 ID - Lu1999 ER - TY - JOUR AU - Xu, Y. AU - Liang, Z. AU - Legrain, C. AU - Ruger, H. J. AU - Glansdorff, N. PY - 2000 DA - 2000// TI - Evolution of arginine biosynthesis in the bacterial domain: novel gene-enzyme relationships from psychrophilic Moritella strains (Vibrionaceae) and evolutionary significance of N-alpha-acetyl ornithinase. JO - J Bacteriol VL - 182 UR - https://doi.org/10.1128/JB.182.6.1609-1615.2000 DO - 10.1128/JB.182.6.1609-1615.2000 ID - Xu2000 ER - TY - JOUR AU - Mironov, A. A. AU - Koonin, E. V. AU - Roytberg, M. A. AU - Gelfand, M. S. PY - 1999 DA - 1999// TI - Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.14.2981 DO - 10.1093/nar/27.14.2981 ID - Mironov1999 ER - TY - JOUR AU - Gelfand, M. S. AU - Koonin, E. V. AU - Mironov, A. A. PY - 2000 DA - 2000// TI - Prediction of transcription regulatory sites in Archaea by a comparative genomic approach. JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.3.695 DO - 10.1093/nar/28.3.695 ID - Gelfand2000 ER - TY - JOUR AU - Dimova, D. AU - Weigel, P. AU - Takahashi, M. AU - Marc, F. AU - Van Duyne, G. D. AU - Sakanyan, V. PY - 2000 DA - 2000// TI - Thermostability, oligomerization and DNA-binding properties of the regulatory protein ArgR from the hyperthermophilic bacterium Thermotoga neapolitana. JO - Mol Gen Genet VL - 263 ID - Dimova2000 ER - TY - JOUR AU - Higgins, C. F. AU - Ames, G. F. PY - 1981 DA - 1981// TI - Two periplasmic transport proteins which interact with a common membrane receptor show extensive homology: complete nucleotide sequences. JO - Proc Natl Acad Sci USA VL - 78 UR - https://doi.org/10.1073/pnas.78.10.6038 DO - 10.1073/pnas.78.10.6038 ID - Higgins1981 ER - TY - JOUR AU - Nishijyo, T. AU - Park, S. M. AU - Lu, C. D. AU - Itoh, Y. AU - Abdelal, A. T. PY - 1998 DA - 1998// TI - Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa. JO - J Bacteriol VL - 180 ID - Nishijyo1998 ER - TY - JOUR AU - Park, S. M. AU - Lu, C. D. AU - Abdelal, A. T. PY - 1997 DA - 1997// TI - Cloning and characterization of argR, a gene that participates in regulation of arginine biosynthesis and catabolism in Pseudomonas aeruginosaPAOI. JO - J Bacteriol VL - 179 ID - Park1997 ER - TY - JOUR AU - Berg, O. G. PY - 1988 DA - 1988// TI - Selection of DNA binding sites by regulatory proteins. Functional specificity and pseudosite competition. JO - J Biomol Struct Dyn VL - 6 UR - https://doi.org/10.1080/07391102.1988.10507713 DO - 10.1080/07391102.1988.10507713 ID - Berg1988 ER - TY - JOUR AU - Summers, D. AU - Yaish, S. AU - Archer, J. AU - Sherratt, D. PY - 1985 DA - 1985// TI - Multimer resolution systems of ColE1 and ColK: localisation of the crossover site. JO - Mol Gen Genet VL - 201 UR - https://doi.org/10.1007/BF00425680 DO - 10.1007/BF00425680 ID - Summers1985 ER - TY - JOUR AU - Overbeek, R. AU - Fonstein, M. AU - D'Souza, M. AU - Pusch, G. D. AU - Maltsev, N. PY - 1999 DA - 1999// TI - The use of gene clusters to infer functional coupling. JO - Proc Natl Acad Sci USA VL - 96 UR - https://doi.org/10.1073/pnas.96.6.2896 DO - 10.1073/pnas.96.6.2896 ID - Overbeek1999 ER - TY - JOUR AU - Dandekar, T. AU - Snel, B. AU - Huynen, M. AU - Bork, P. PY - 1998 DA - 1998// TI - Conservation of gene order: a fingerprint of proteins that physically interact. JO - Trends Biochem Sci VL - 23 UR - https://doi.org/10.1016/S0968-0004(98)01274-2 DO - 10.1016/S0968-0004(98)01274-2 ID - Dandekar1998 ER - TY - STD TI - GenBank. [http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?db=Genome] UR - http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?db=Genome ID - ref37 ER - TY - STD TI - Genome Therapeutics Corporation. [http://www.genomecorp.com/] UR - http://www.genomecorp.com/ ID - ref38 ER - TY - JOUR AU - Felsenstein, J. PY - 1996 DA - 1996// TI - Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. JO - Methods Enzymol VL - 266 UR - https://doi.org/10.1016/S0076-6879(96)66026-1 DO - 10.1016/S0076-6879(96)66026-1 ID - Felsenstein1996 ER - TY - STD TI - Structural classification of proteins. [http://scop.mrc-lmb.cam.ac.uk/scop/data/scop.1.001.004.004.html] UR - http://scop.mrc-lmb.cam.ac.uk/scop/data/scop.1.001.004.004.html ID - ref40 ER - TY - JOUR AU - Fogh, R. H. AU - Ottleben, G. AU - Ruterjans, H. AU - Schnarr, M. AU - Boelens, R. AU - Kaptein, R. PY - 1994 DA - 1994// TI - Solution structure of the LexA repressor DNA binding domain determined by 1H NMR spectroscopy. JO - EMBO J VL - 13 ID - Fogh1994 ER - TY - JOUR AU - Van Duyne, G. D. AU - Ghosh, G. AU - Maas, W. K. AU - Sigler, P. B. PY - 1996 DA - 1996// TI - Structure of the oligomerization and L-arginine binding domain of the arginine repressor of Escherichia coli. JO - J Mol Biol VL - 256 UR - https://doi.org/10.1006/jmbi.1996.0093 DO - 10.1006/jmbi.1996.0093 ID - Van Duyne1996 ER - TY - JOUR AU - Sunnerhagen, M. AU - Nilges, M. AU - Otting, G. AU - Carey, J. PY - 1997 DA - 1997// TI - Solution structure of the DNA-binding domain and model for the complex of multifunctional hexameric arginine repressor with DNA. JO - Nat Struct Biol VL - 4 UR - https://doi.org/10.1038/nsb1097-819 DO - 10.1038/nsb1097-819 ID - Sunnerhagen1997 ER - TY - JOUR AU - Ni, J. AU - Sakanyan, V. AU - Charlier, D. AU - Glansdorff, N. AU - Van Duyne, G. D. PY - 1999 DA - 1999// TI - Structure of the arginine repressor from Bacillus stearothermophilus. JO - Nat Struct Biol VL - 6 UR - https://doi.org/10.1038/8229 DO - 10.1038/8229 ID - Ni1999 ER -