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Table 1 Array resources currently represented in RESOURCERER, with the total number of elements in each

From: RESOURCERER: a database for annotating and linking microarray resources within and across species

Species

Dataset

Total number of elements

Human

Research Genetics

46,656

 

Operon Human

13,972

 

Affymetrix Human All

63,175

 

Affymetrix_HG-U95A

12,626

 

Affymetrix_HG-U95B

12,620

 

Affymetrix_HG-U95C

12,646

 

Affymetrix_HG-U95D

12,644

 

Affymetrix_HG-U95E

12,639

Rat

TIGR 13K Rat Set

12,362

 

Affymetrix Rat All

26,379

 

Affymetrix_RG-U34A

8,799

 

Affymetrix_RG-U34B

8,791

 

Affymetrix_RG-U34C

8,789

Mouse

NIA

15,247

 

BMAP

11,136

 

NIA + BMAP

26,383

 

Operon Mouse

6,868

 

Affymetrix Mouse All

38,018

 

Affymetrix_MG-U74A

12,654

 

Affymetrix_MG-U74B

12,636

 

Affymetrix_MG-U74C

12,728

  1. The Research Genetics human clone set is their sequence-verified collection [6]. The Operon oligonucleotide sets are available for human, mouse, and rat [10]. GeneChipsâ„¢ from Affymetrix [11] are listed separately for each species, as well as collectively where, for example, 'Affymetrix Mouse All' is MU-74A + MU-74B + MU-74C. In mouse, the BMAP clone set was derived through the Brain Molecular Anatomy Project [7], and the NIA clone set was developed by M. Ko through a survey of mouse developmental stages [8,9]. The TIGR Rat 13K set was produced through an NHLBI funded project to generate a collection of unique, annotated rat cDNA clones.