Table 3 Clusters having SD-like PCEs
Gene | Functional classification* |
|---|---|
atpG | Membrane bioenergetics |
spoVG | Sporulation |
yyaA | Sporulation |
rpsS | Ribosomal proteins |
rpoC | Elongation |
rpsL | Ribosomal proteins |
rpoB | Elongation |
ydaO | None |
ydcD | None |
secG | None |
sspE | Sporulation |
rplK | Ribosomal proteins |
sspA | Sporulation |
rpsF | Ribosomal proteins |
rplJ | Ribosomal proteins |
rplU | Ribosomal proteins |
ftsA | Cell division |
rpmE | Ribosomal proteins |
fusA | Elongation |
cysE | Metabolism of amino acids and related molecules |
yeeI | None |
rpoA | Elongation |
gerE | Regulation |
sigA | Initiation |
gerM | Germination |
asnS | Aminoacyl-tRNA synthetases |
nusG | Termination |
ypjB | None |
yjcI | Metabolism of amino acids and related molecules |
sigG | Initiation |
acpA | Metabolism of lipids |
prfA | Termination |
thdF | Detoxification |
minC | Cell division |
cwlJ | Cell wall |
hag | Mobility and chemotaxis |
aprX | Metabolism of amino acids and related molecules |
tsf | Elongation |
yvgY | Transport/binding proteins and lipoproteins |
yabR | Metabolism of nucleotides and nucleic acids |
yqfC | None |
ileS | Aminoacyl-tRNA synthetases |
yocD | Detoxification |
gcvH | Metabolism of amino acids and related molecules |
rpsJ | Ribosomal proteins |
rplQ | Ribosomal proteins |
dnaA | DNA replication |
thrS | Aminoacyl-tRNA synthetases |
ysgA | RNA modification |
yjzC | None |
ytdA | Specific pathways |
ywrD | Metabolism of amino acids and related molecules |
spoVT | Regulation |
dxs | Specific pathways |
pyrP | Transport/binding proteins and lipoproteins |
leuS | Aminoacyl-tRNA synthetases |
ykkC | Protein folding |
ylaN | None |
yslB | None |
thrS | Aminoacyl-tRNA synthetases |
rpsD | Ribosomal proteins |
yvdF | Specific pathways |
citG | TCA cycle |
ykoY | Detoxification |
ripX | Phage-related functions |
trpE | Metabolism of amino acids and related molecules |
lepA | Elongation |
greA | Elongation |
ytaG | None |
citZ | TCA cycle |
ykzG | None |
yocC | None |
ybyB | None |
pgk | Main glycolytic pathways |
pheS | Aminoacyl-tRNA synthetases |
pbpX | Cell wall |
rpsB | Ribosomal proteins |
ybxF | Ribosomal proteins |
gcaD | Cell wall |
yrrK | None |
zur | Regulation |
yjbK | None |
pdhA | Main glycolytic pathways |
yneF | None |
fbaA | Main glycolytic pathways |
rocD | Metabolism of amino acids and related molecules |
cah | Detoxification |
appA | Transport/binding proteins and lipoproteins |
appA | Transport/binding proteins and lipoproteins |
yobV | None |
spoIVA | Sporulation |