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Table 3 Classification of putative protein-coding genes of Rhizobium sp. NGR234 cured of its symbiotic plasmid (= ANU265)

From: Genetic snapshots of the Rhizobiumspecies NGR234 genome

Clone Homolog description Clone Homolog description
No. Name   No. Name  
Cell envelope and cellular processes    53 26d04 sugar transp. ATP-binding prot.
Cell wall    54 26h11 sugar transp. ATP-binding prot.
1 01d07 N-acetylmuramoyl-L-alanine amidase 55 05b03 sugar transp. system permease prot.
2 06g04 N-acetylglucosamine-1-phosphate uridyl Tase 56 30b08 sugar transp. system permease prot.
3 26b06 UDP-N-acetylenolpyruvoylglucosamine RDase MurB 57 26a07 sugar ABC transp., ATP-binding prot.
4 28f02 UDP-N-acetylmuramate-alanine ligase MurC 58 14e06 xylose transp. permease prot.
5 22b10 UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD 59 03f04 xylose transp. permease prot.
6 29g07 UDP-N-acetylmuramyl-tripeptide synthetase MurE 60 19a04 maltose binding prot.
7 08h05 UDP-N-acetylmuramyl-tripeptide synthetase MurE 61 11c09 membrane bound sugar transp. prot.
8 12f10 outer membrane prot. 62 18a12 sugar transp. ATP-binding prot.
9 17a08 outer membrane prot. Omp28 63 28e01 sugar transp. ATP-binding prot.
10 21h07 group 1 outer membrane prot. OMP1 precursor60 64 30f09 sugar transp. prot.
11 18f12 penicillin-binding prot. 1B 65 01c10 galactoside transp. system permease prot.
12 19h11 penicillin-binding prot. 1A 66 19g07 galactoside transp. ATP-binding prot.
13 29f10 D-alanyl-D-alanine carboxypeptidase 67 21e06 branched-chain amino acid transp.
14 19d01 monofunctional biosynthetic peptidoglycan TGase MtgA 68 29a02 amino-acid ABC transp. permease prot.
15 28f09 lysozyme M1 precursor Acm 69 27b03 amino-acid ABC transp. permease prot.
16 03f07 acriflavine resistance prot. E precursor AcrE 70 05c04 ABC transp. permease prot.
   16a 09h01 overlaps clone 03f07 71 07b05 amino-acid ABC transp. ATP-binding
Transport/ binding proteins and lipoproteins    72 19h08 amino-acid ABC transp. ATP-binding
17 22a03 sugar-binding transp. ATP-binding prot. 73 06a09 amino-acid ABC transp. ATP-binding
18 08h08 ABC transp. ATP-binding prot. 74 11d03 glutamate/ aspartate transp. system permease prot.
19 29c10 sugar ABC transp., permease prot. 75 21d10 high-affinity branched-chain amino acid transp.
20 03f05 inner membrane prot.of trehalose/ maltose transp.    75a 24a05 overlaps clone 21d10
21 02h10 transp. permease prot. 76 02c01 amino acid ABC transp.
   21a 09f05 overlaps clone 02h10 77 08f08 branched-chain amino acid transp. prot.
22 11c04 ABC transp. permease prot. 78 10e04 branched-chain amino acid transp. prot.
23 12d03 inner membrane ABC transp. 79 17b01 branched-chain amino acid transp. prot.
24 18h08 sugar ABC transp. ATP-binding prot. 80 08g08 branched-chain amino acid transp. prot.
25 21b03 ATP-binding transp. prot. 81 04g02 branched-chain amino acid transp. permease prot.
26 01h04 ATP-binding transp. prot. 82 28h02 high-affinity branched-chain amino acid transp.
27 21b11 ATP-binding transp. prot.    82a 08a04 overlaps clone 28h02
28 26g01 maltose/ maltodextrin transp. ATP-binding prot.    82b 11g01 overlaps clone 28h02
29 18g11 sugar ABC transp. ATP-binding prot. 83 16c12 periplasmic dipeptide transp. prot. precursor
30 24e03 ABC transp. ATP-binding prot. 84 03h07 dipeptide ABC transp.
31 02c09 ABC transp. ATP-binding prot. 85 10d11 peptide ABC transp. permease prot.
   31a 12f05 overlaps clone 02c09 86 15e08 ABC transp. ATP-binding prot.
32 28g12 ABC transp. ATP-binding prot. 87 04a06 peptide ATP-bind. transp.
   32a 01a11 overlaps clone 28g12 88 09a09 peptide ABC transp. permease prot.
   32b 09h06 overlaps clone 28g12 89 12c06 peptide ABC transp. permease prot.
33 01a10 ribose transp. ATP-binding prot. 90 03f10 ABC transp.
34 06h03 D-ribose-binding periplasmic prot. precursor 91 22c01 ABC transp. ATP-binding prot.
35 14e04 sugar transp. system permease prot. 92 19b12 ABC transp. ATP-binding prot.
36 18d02 sugar transp. system permease prot. 93 23g09 peptide ABC transp. ATP-binding prot.
37 04e03 sugar transp. system permease prot. 94 18e05 ABC transp. ATP-binding prot.
38 14f09 sugar transp. system permease prot. 95 14d12 oligopeptide ABC transp.
39 08g05 sugar transp. system permease prot. 96 19c05 oligopeptide binding prot.
40 06b09 sugar transp. system permease prot. 97 21g02 peptide ABC transp.
41 19e12 sugar transp. system permease prot. 98 22h09 dipeptide transp. ATP-binding prot.
42 16f12 membrane-spanning permease 99 25c02 oligopeptide transp. ATP-binding prot.
43 26d10 sugar transp. system permease prot.    99a 23c05 overlaps clone 99
44 23b06 sugar transp. system permease prot. 100 27b09 oligopeptide ABC transp. permease prot.
45 27h12 ABC transp. integral membrane prot. 101 27c09 oligopeptide-binding prot. precursor
46 22d10 ribose ABC transp. permease prot. 102 30a09 oligopeptide transp. ATP-binding prot
47 25a11 sugar transp. 103 03b02 ABC transp., y4wM pNGR234a
48 21a06 sugar transp. ATP-binding prot. 104 03g02 ABC transp., y4wM pNGR234a
49 21b02 sugar transp. ATP-binding prot. 105 07c06 ABC transp., y4wM pNGR234a
50 24d10 galactoside transp. ATP-binding prot. MglA 106 30e02 ATP-binding prot.
51 24e10 lactose transp. system permease prot. LacF 107 05c03 ATP-binding prot.
52 11f10 sugar transp. prot. 108 20e03 ATP-binding prot.
109 19f02 ABC transp. ATP-binding prot. 164 01h09 L-asparagine permease AnsP
110 19d07 ABC transp. ATP-binding prot. 165 29d05 C4-dicarboxylate transp. prot. DctA1 pNGR234a
111 16a07 ATP-dependent transp. 166 20a10 C4-dicarboxylate transp. prot. DctA1 pNGR234a
112 17f05 ABC transp. ATP-binding prot. 167 20c09 chelated iron ABCtransp. ATP-binding prot.
113 09d03 ABC transp. ATP-binding prot. 168 29f01 chelated iron ABCtransp. ATP-binding prot.
114 17h02 putrescine transp. system permease prot. 169 03c12 chelated iron transp. system membrane prot.
115 22e01 inner membrane prot. 170 19a03 chelated iron transp. system membrane prot.
116 02g07 spermidine/ putrescine transmembrane prot. 171 11d07 chelated iron transp. system membrane prot.
   116a 06d04 overlaps clone 02g07 172 26g08 iron transp. prot.
   116b 24b12 overlaps clone 06d04 173 20e11 phosphoenolpyruvate-prot. phosphoTase
117 13b12 putrescine transp. prot. 174 20e12 Na+/H+-exchanging prot. system component
118 06d07 putrescine transp. permease prot. 175 22b06 mannopine-binding periplasmic prot. motA
119 09b07 putrescine transp. permease prot.    175a 21g06 overlaps clone 22b06
   119a 06b04 overlaps clone 09b07 176 21h10 sulfate transp. system permease prot.
120 24a01 glycine betaine transp. system permease prot 177 29h02 taurin-binding periplasmic prot
121 24f03 glycine betaine transp. system permease prot 178 22d09 cytoplasmic membrane prot. CeoB
122 28c03 glycine betaine / proline transp. prot. ProV 179 28f12 integral membrane prot. (sodium:sulfate symporter)
123 10h02 inner membrane prot. 180 23g03 sulphate transp. system permease prot. CysT
124 03b03 aquaporin Z (bacterial nodulin-like intrinsic prot.) 181 25h07 transp. prot., y4xM pNGR234a
125 03c04 arginine / ornithine antiporter 182 24h07 periplasmic binding prot.
126 03e12 glycerol-3-phosphate-binding periplasmic prot. 183 08c01 lipoprot. LppB/NlpD
127 22g07 glycerol-3-phosphate transp. prot.    183a 10c07 overlaps clone 08c01
128 05a06 acriflavine resistance lipoprot. A precursor 184 24f12 lipoprot.
129 29h11 acriflavine resistance prot. B 185 23h12 lipoprot.
   129a 15d06 overlaps clone 29h11 186 06a01 outer membrane lipoprot.
130 14b09 acriflavine resistance prot.    186a 11a05 overlaps clone 06a01
131 14c06 antibiotic resistance prot    186b 21d02 overlaps clone 11a05
   131a 05c12 overlaps clone 14c06    
132 04d08 Leu/ Ile/ Val/ (Thr/Ala)-binding prot. precursor Sensors (signal transduction)   
133 07e02 cytoplasmic prot. CeoB 187 12f09 sensor histidine kinase ExsG
134 01c07 NolH (AcrB/AcrD/AcrF family prot.)    187a 15d09 overlaps clone 12f09
135 27a10 FixI; E1-E2 type cation ATPase 188 18f03 sensor histidine kinase ExsG
136 12b12 heavy-metal P-type ATPase 189 06a07 sensor prot. TctD
137 29f07 cation-transp. ATPase PacS 190 16d05 sensor prot. for potassium transp. KdpD
138 11e02 H+/Ca2+ exchanger 191 06d10 sensor prot. for potassium transp. KdpD
139 01g05 tonB-dependent outer membrane heme receptor HemR    191a 25f03 overlaps clone 06d10
140 02b10 inner membrane prot., energy transducer TonB    191b 26d08 overlaps clone 06d10
141 27h11 TonB-dependent transp. ExbD 192 09c11 two-component sensor histidine kinase
142 02b11 nitrite extrusion prot.    192a 26a04 overlaps clone 09c11
143 08f10 nitrate transp. permease prot. nrtB 193 10f06 C4-dicarboxylate sensor prot. DctB
144 16d07 nitrate transp. prot. NrtD 194 13b09 C4-dicarboxylate sensor prot. DctB
145 09g09 phosphate transp. prot. PhoE 195 14c01 sensor of two-component system FlhS
146 27h09 phosphate transp. prot. PhoT 196 01g04 sensor of two-component system FlhS
   146a 11g03 overlaps clone 27h09 197 15f11 prokaryotic sensory transduction prot.
147 17e11 phosphate transp. prot. PhoT 198 15g02 sensory transduction histidine kinase
148 17c11 phosphate transp. prot. Pit 199 19a06 sensory transduction histidine kinase
149 21a10 phosphate transp. prot. Pit linked to RIME 2    199a 22d04 overlaps clone 19a06
150 04d06 Pit accessory protein orfA 200 22g10 histidine kinase sensory prot. ExoS
151 12d06 macrolide-efflux determinant 201 23e05 histidine prot. kinase ActS
152 13d04 cation efflux system prot. 202 29f03 sensor kinase NwsA
153 17e08 cation efflux system prot.    
154 21e03 ferric siderophore receptor Membrane bioenergetics (electron transport, etc)   
   154a 14c02 overlaps clone 21e03 203 09f04 pyridine nucleotide transhydrogenase sub. a PntA
155 29b02 ferric siderophore receptor 204 02h05 pyridine nucleotide transhydrogenase sub. a PntA
   155a 18g03 overlaps clone 29b02 205 09d11 pyridine nucleotide transhydrogenase sub. a PntA
156 14e12 potassium uptake prot. Kup 206 20h04 pyridine nucleotide transhydrogenase sub. ß PntB
157 14f07 phosphoenolpyruvate-prot. phosphoTase 207 25g07 pyridine nucleotide transhydrogenase sub. ß PntB
158 15f09 ABC transp. ATP-binding prot. 208 13b05 FixN cytochrome CBB3 sub. 1
159 16d04 molybdenum transp. prot. 209 01b04 FixN cytochrome CBB3 sub. 1
160 16g11 periplasmic sulphate binding prot. Sbp 210 08a07 FixS cbb3-type cytochrome oxidase formation prot.
161 04f12 periplasmic sulphate binding prot. Sbp 211 24d07 cytochrome-c oxidase chain IIIB CoxP
162 18b09 drug efflux pump (AcrB/AcrD/AcrF family) 212 05f03 cytochrome BB3 sub. 1 CoxN
163 18d12 tartrate transp. TtuB    212a 03h10 overlaps clone 05f03
   212b 12g07 overlaps clone 05f03 268 13h11 capsular polysaccharide biosynthesis prot.
213 05f06 cytochrome C oxidase assembly prot. CoxZ 269 08c05 spore coat polysaccharide biosynthesis prot.E
214 05e03 cytochrome C-type biogenesis prot. CycJ/K 270 14d02 ß-(1,2)-glucans production inner-membrane prot. NdvB
215 06d08 cytochrome C-type biogenesis prot. CycH    
216 11f02 cytochrome c-type biogenesis prot. CcdA Mobility / chemotaxis   
217 12e03 cytochrome oxidase d, sub. II 271 17a10 (MCP)-glutamate methylesterase CheB
218 11g05 ubiquinol-cytochrome C RDase iron-sulfur sub. 272 05c06 flagellar basal-body (proximal) rod prot. FlgB
219 15e06 cytochrome o ubiquinol oxidase sub. III 273 29g09 flagellar biosynthetic prot. FlhB
220 29e05 cytochrome c small sub. of nitric oxide RDase    273a 08g10 overlaps clone 29g09
221 06h06 glycolate oxidase iron-sulfur sub. (Fe-S prot.)    273b 24g01 overlaps clone 08g10
   221a 07e07 overlaps clone 06h06 274 13b08 flagellar biosynthetic prot. FliQ
222 08h10 ATP synthase a-chain 275 12f06 flagellar basal-body MS-ring prot. FliF
   222a 14d10 overlaps clone 08h10 276 14e10 flagellar hook prot. FlgE
   222b 22c06 overlaps clone 14d10 277 14f11 flagellar basal-body (distal) rod prot. FlgG
223 17f07 ATP synthase ?-chain 278 17c05 flagellar C-ring prot. FliG
224 09a12 NADH-ubiquinone oxidoRDase (CI-40 kDa) 279 26d03 flagellar biosynthetic prot. FliP
225 09h02 NADH-ubiquinone oxidoRDase (CI-51kDa) 280 18g10 flagellar basal-body rod prot. FlgF
226 13d12 cyanide insensitive terminal oxidase CioAB 281 27a08 flagellin prot. FlaD
227 01g02 NADH DHase (ubiquinone), sub. 1 282 20h07 new class of flagellar prot. FlmD
228 19b04 NADH DHase    282a 19b08 overlaps clone 20h07
229 12a01 NADH ubiquinone oxidoRDase    282b 30a08 overlaps clone 20h07
230 20c11 NADH ubiquinone oxidoRDase 283 07h07 chemotactic transducer for amino acids
231 06e08 NADH ubiquinone oxidorRDase 284 13g03 methyl-accepting chemotaxis prot
232 26e10 NADH ubiquinone oxidoRDase 285 11b02 methyl-accepting chemotaxis prot
233 08g12 NADH ubiquinone oxidoRDase 286 11c06 methyl-accepting chemotaxis prot
234 21h02 NADH ubiquinone oxidoRDase 287 15b10 methyl-accepting chemotaxis prot
235 22a06 NADH ubiquinone oxidoRDase 288 16b03 methyl-accepting chemotaxis prot
236 27c06 NADH ubiquinone oxidoRDase 289 16f10 methyl-accepting chemotaxis prot
237 24b11 electron transfer flavoprotein-ubiquinone oxidoRDase 290 28h04 methyl-accepting chemotaxis prot
238 25a08 glutathione RDase 291 28a12 methyl-accepting chemotaxis prot
239 01h05 thioredoxin 292 27f01 chemotaxis prot. methylTase CheR
240 29a01 thioredoxin RDase    292a 15e07 overlaps clone 27f01
241 16d03 ferredoxin [2Fe-2S] II Cell division   
242 19f07 ferredoxin-type prot. [4Fe-4S] 293 05f02 cell division prot. FtsH
243 09c06 ferredoxin [3Fe-4S] [4Fe-4S] 294 08d04 cell division prot. FstK
244 26a10 ferredoxin, [2Fe-2S] 295 16b04 cell division prot. FtsK
   244a 05c08 overlaps clone 26a10 296 16e07 septum formation prot. Maf
   244b 18a04 overlaps clone 26a10 297 25f06 cell division inhibitor MinC
Surface polysaccharide - biosynthesis and export    Protein secretion   
245 01c04 ExoB UDP-galactose 4-epimerase 298 14c09 ABC transp. type I PrsD
246 03a05 ExoB UDP-galactose 4-epimerase    298a 06a04 overlaps clone 14c09
247 06a08 ExoN UDP-glucose pyrophosphorylase 299 24e06 ABC transp. type I PrsD
248 07g05 ExoN UDP-glucose pyrophosphorylase 300 11h03 membrane fusion prot. type I PrsE
249 10e08 ExoF exopolysaccharide production prot. precursor 301 29e03 membrane fusion prot. type I PrsE
250 10c12 ExoK endo-ß-1,3-1,4-glucanase 302 06h10 general secretion pathway prot. D precursor XpsD
251 18b08 ExoP succinoglycan transp. prot.    302a 03e03 overlaps clone 06h10
252 22e05 ExoU succinoglycan biosynthesis glycosylTase 303 12h06 general secretion prot. F XcpS
253 27h01 ExoU succinoglycan biosynthesis glycosylTase    303a 10c03 overlaps clone 12h06
254 18h12 ExoY exopolysaccharide production prot. 304 29d12 general secretion prot. D GspD
255 25h10 ExoL succinoglycan biosynthesis glycosylTase    304a 12e11 overlaps clone 29d12
256 17b10 exopolysaccharide production prot. Pss    304b 10e05 overlaps clone 12e11
257 11a12 KPS production, fatty acid synthase RkpC 305 22g03 general secretion prot. E GspE
258 27f08 KPS modification / export prot. RkpI 306 28g09 pNGR234a, probable translocation prot. RhcT
259 11d09 KPS modification / export prot. RkpJ 307 29b12 preprotein translocase SecA sub.
260 17h04 polysialic acid transp. prot. KpsM    
261 21b04 specialized small acyl carrier prot. (lipid A) Chaperones   
262 10c11 N-acetylglucosamine deacetylase (lipid A) 308 10d03 heat shock prot. cnp60 GroEL
263 10b05 3-deoxy-D-manno-octulosonic-acid (Kdo) Tase KdtA 309 21a09 heat shock prot. cnp60 GroEL
264 18f02 3-deoxy-D-manno-octulosonic-acid (Kdo) Tase KdtA 310 26d02 heat shock prot. cnp10 A GroES
265 26h01 3-deoxy-manno-octulosonate cytidylylTase KpsU 311 21a03 heat shock prot. cnp60 GroEL
266 12c02 membrane bound galactosylTase RfpB 312 07c04 small heat shock prot. HspF
267 08h09 O-antigen acetylase 313 14e03 small heat shock prot. (hsp20-2)
   313a 18g01 overlaps clone 14e03 365 21f02 mannonate DTase
314 28f11 18 kd antigen2 (small heat shock prot. Hsp20 family) 366 16g05 alcohol DHase
315 15g09 small heat shock prot. HspE 367 17c02 phosphomannomutase AlgC
316 17b02 DnaJ-like heat shock chaperone prot. 368 17f03 glycogen phosphorylase
317 01e06 heat shock prot. 90 HtpG 369 18d11 phosphoglucomutase
318 23g01 heat shock prot. X HtpX 370 18f01 L-ribulose-P-4-epimerase (AraD/FucA family)
Cell death    371 18h09 triosephosphate isomerase
319 08h11 hemolysin-like prot. TlyC 372 19d03 starch (bacterial glycogen) synthase
   319a 05b05 overlaps clone 08h11 373 20d06 zinc-type alcohol DHase-like prot
320 04h12 cyclolysin (haemolysin-adenylate cyclase toxin) 374 20d08 glutathione-dependent formaldehyde DHase
321 22b07 cyclolysin (haemolysin-adenylate cyclase toxin) 375 20e05 succinate DHase (iron-sulfur prot.)
322 10b08 cyclolysin (haemolysin-adenylate cyclase toxin) 376 20h10 tartrate DHase
323 21g08 cyclolysin (haemolysin-adenylate cyclase toxin) 377 21b06 lactaldehyde DHase
324 12b07 iron-regulated prot. (cytotoxins Ca2+ binding domain) 378 02d12 D-lactate DHase
325 20c02 hemolysin 379 22b08 D-lactate DHase
    380 22c08 dihydrolipoamide acetylTase
Intermediary metabolism    381 28b09 dihydrolipoamide DHase
Metabolism of carbohydrates and related molecules    382 30a11 dihydrolipoamide DHase
326 01b09 glucose-6-phosphate isomerase 383 23f06 transketolase
327 24c09 glucose-6-phosphate isomerase 384 23h07 a-glucosidase
328 18g07 glucose-6-phosphate isomerase 385 28a07 D-mannonate oxidoreductase
   328a 20e09 overlaps clone 18g07 386 28c08 glutathione-independent formaldehyde DHase
329 09a03 glyoxylate carboligase 387 29a04 y4uC, pNGR234a, aldehyde-DHase-like prot
330 01c12 a-ketoglutarate DHase 388 29h05 fumarate hydratase
   330a 24d12 Overlaps clone 01c12 389 30b10 mannitol 2-DHase
331 16g02 acetoin:DCPIP oxidoRDase a 390 05d12 isocitrate lyase
332 02e09 acetoin:DCPIP oxidoRDase ß Metabolism of amino acids and related molecules   
333 02e11 succinyl-coA synthetase ß chain 391 27a11 a-isopropylmalate synthase LeuA
334 03e11 ribulose-bisphosphate carboxylase, large sub. 392 27d07 a-isopropylmalate synthase LeuA
335 03h09 citrate synthase 393 14d11 a-isopropylmalate synthase LeuA
336 05b01 L-xylulose kinase 394 14b07 3-isopropylmalate dehydratase small sub.LeuD
337 06c08 dihydoxyacetone kinase 395 25g10 aspartate ammonia-lyase AspA
338 18g08 dihydoxyacetone kinase 396 02c06 aspartate ATase (AspC family)
339 06g05 lipoamide DHase E3 subunit of a-ketoacid DHase complex. 397 02h01 5-methyltetrahydrofolate-homocysteine Tase MetH
340 04g03 alcohol DHase(acceptor) precursor 398 06d09 3-dehydroquinate synthase AroD
341 04h06 malate DHase 399 03c03 3-dehydroquinate synthase AroD
342 09d09 malate DHase 400 18c04 shikimate 5-dehydrogenase AroE
343 07e09 glycogen operon protein (glycosyl hydrolases family) 401 28a08 shikimate 5-dehydrogenase AroE
344 08b07 alcohol DHase 402 02h02 3-dehydroquinate DTase AroQ
345 08e03 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase    402a 20f02 overlaps clone 02h02
346 13a05 glycolate oxidase sub 403 03b05 aspartate aminoTase B
347 09d08 glycolate oxidase sub 404 29b06 aspartate aminoTase B
348 10c06 acetyl-CoA synthetase 405 26d07 aspartate aminoTase
349 11b03 aconitate hydratase (citrate hydro-lyase) 406 11e06 aspartate aminoTase
350 25a09 aconitate hydratase (citrate hydro-lyase) 407 03e05 y4sL pNGR234a, D-amino-acid DHase
351 01b12 2-keto-3-deoxygluconokinase 408 03g10 adenylosuccinate Sase (IMP-aspartate ligase) PurA
352 15a09 ribitol kinase 409 04a04 glutamate 5 -kinase
353 11c02 glucose DHase (pyrroloquinoline-quinone) 410 05d06 N-acyl-L-aminoacid amidohydrolase (aminoacylase)
354 25b01 formaldehyde DHase (glutathione) 411 05e10 assimilatory nitrate RDase sub. NirB
   354a 11c11 overlaps clone 25b01    411a 05h01 overlaps clone 05e10
355 09a10 ß-glucosidase (cellulose degradation) 412 05g02 3-isopropylmalate DTase large sub. LeuC
356 07a05 ß-glucosidase (cellulose degradation) 413 05g05 class III pyridoxal-phosphate-dependent ATase
357 18b12 ß-glucosidase (cellulose degradation) 414 06a10 threonine deaminase IlvA
   357a 12b03 overlaps clone 18b12 415 26f02 threonine deaminase IlvA
   357b 07f11 overlaps 12b03 416 13g01 acetolactate Sase (acetohydroxy-acid Sase) IlvB
358 12c07 NADP-dependent malic enzyme 417 01b11 acetolactate Sase (acetohydroxy-acid Sase) IlvB
359 12g01 phosphogluconate DHase 418 08b10 dihydroxy-acid DTase IlvD
360 28c02 glutathione-dependent formaldehyde DHase 419 18c03 dihydroxy-acid DTase IlvD
361 04h08 glycerol-3-phosphate DHase 420 06b12 histidinol DHase HisD
362 14g01 glycerol-3-phosphate DHase 421 07a04 N-acetylornithine ATase
363 30f10 glycerol-3-phosphate DHase 422 07b06 low specificity D-threonine aldolase
364 15e12 dTDP-glucose 4-6-DTase 423 08f03 branched-chain a-keto acid DHase component E1
424 30a04 serine acetylTase (CysE/LacA/LpxA/NodL family) 480 12f08 adenylate kinase (ATP-AMP transphosphorylase)
   424a 10c10 overlaps clone 30a04    480a 09b05 overlaps clone 12f08
425 10e02 anthranilate synthase (tryptophan biosynthesis) TrpE/G 481 11c12 deoxyuridine 5’ triphosphate nucleotidohydrolase
426 30e09 anthranilate synthase (tryptophan biosynthesis) TrpE/G 482 14g07 cytosine deaminase CodA
427 11e05 serine hydroxymethylTase GlyA 483 05e12 phosphoribosylformylglycinamidine synthase PurQ
428 29h12 tryptophan synthase TrpA 484 17b06 phosphoribosylformylglycinamidine synthase PurQ
429 11f03 homoserine DHase 485 15f05 formyltetrahydrofolate deformylase-like prot. PurU
430 11h02 5,10-methylenetetrahydrofolate RDase MetF 486 23e07 phosphoribosylformylglycinamidine PurL
   430a 15a08 overlaps clone 11h02 487 29g10 thymidine kinase
431 11h04 proline DHase PutA    
432 18d05 proline DHase PutA Metabolism of lipids   
433 25c05 proline DHase PutA 488 09a01 Nod Factor fatty acyl chain modification NodG
434 12b02 glutaryl-CoA DHase (acyl-coA DHase. family) 489 17c10 3-hydroxydecanoyl-acyl-carrier-prot. DTase FabA
435 12f03 glycine acetylTase 490 03c07 fatty oxidation complex a sub. FadB
436 13h10 homoserine DHase 491 05h03 3-oxoacyl-acyl-carrier-prot. synthase I FabB
437 14f01 ethanolamine ammonia-lyase heavy chain EutB 492 19g02 malonyl CoA-acyl carrier prot. transacylase FabD
438 15b01 2-oxoisovalerate DHase a sub. 493 10b03 3-oxoacyl-acyl carrier prot.synthase II FabF
439 15d01 methionine gamma-lyase Megl 494 22d03 3-oxoacyl-acyl carrier prot. synthase II FabF / NodE
440 19g12 methionine gamma-lyase MegL 495 15c04 3-oxoacyl-acyl-carrier-prot. synthase III FabH
441 16h06 4-hydroxyphenylpyruvate dioxygenase 496 30f01 enoyl-acyl-carrier-prot. Rdase (NADH) FabI
442 19g03 arginine deiminase ArcA 497 01c09 enoyl-CoA hydratase
443 29h06 arginine deiminase ArcA 498 05d10 3-hydroxyisobutyrate DHase
444 29c04 ornithine cyclodeaminase ArcB 499 10h05 long-chain-fatty-acid--CoA ligase RpfB
   444a 17g07 overlaps clone 29c04 500 05g09 acyl-coA DHase
445 23c08 ornithine cyclodeaminase ArcB 501 15e01 acyl-coA DHase
446 18e07 hydroxypyruvate RDase 502 17h07 3-hydroxybutyryl-CoA DHase
447 19d12 asparagine synthetase 503 19c09 3-hydroxybutyryl-CoA DHase
448 19e03 agmatine ureohydrolase SpeB 504 21h04 sulfolipid biosynthesis prot. SqdA
449 19h06 alanine racemase 505 22d05 sub. A of acetyl-coA carboxylase
450 20d07 ornithine/acetylornithine aminoTase 506 01h11 acetyl-CoA carboxylTase ß-sub.
451 21e02 urocanate hydratase HutU    
452 21f08 adenosylhomocysteinase Metabolism of cofactors / prosthetic groups   
453 22d08 adenosylhomocysteinase 507 02c03 coenzyme PQQ synthesis prot. C
454 09b12 phosphoglycerate DHase SerA 508 05e02 coenzyme PQQ synthesis prot. E
455 25b12 D-3-phosphoglycerate DHase    508a 03a08 overlaps clone 05e02
456 22e04 aminotripeptidase PepT 509 03c06 DNA / panthotenate metabolism flavoprot.
457 22e08 4-hydroxybenzoate hydroxylase PobA 510 03e04 dihydroxybenzoate DHase EntA
458 22h10 chorismate mutase / prephenate dehydratase PheA    510a 10a12 overlaps clone 03e04
459 25c08 diaminopimelate decarboxylase LysA 511 03g11 glutathione Tase
460 06f04 sarcosine oxidase a SoxA 512 05b08 thiamine biosynthesis prot. ThiC
461 25e04 sarcosine oxidase a SoxA 513 03g09 thiamine biosynthesis prot. ThiG
462 01e05 sarcosine oxidase ß SoxB 514 05b12 S-adenosylmethionine: 2-demethylmenaquinonemethylTase
463 03c10 sarcosine oxidase d SoxD 515 12e09 cobyrinic acid a,c-diamide synthase CobB
464 21h08 sarcosine DHase 516 11b11 precorrin isomerase CobH
465 26a01 sarcosine DHase 517 02b03 cobalamin synthesis prot. CobN
   465a 07f10 overlaps clone 26a01 518 05d05 cobalamin/porphyrin biosynthesis prot. CobS
466 21b09 ferredoxin-dependent glutamate Sase GltB 519 28e08 cobalamin synthesis prot. CobT
467 24d04 NADH-glutamate synthase small sub. GltD 520 10d09 glutathione S-Tase Gst
468 13e08 NADPH dependent glutamate synthase small sub. GltX 521 21d03 glutathione synthetase GshB
469 01h06 glutamine synthetase II GlnII    521a 06b03 overlaps clone 21d03
470 26f03 dihydrodipicolinate synthase DapA 522 06e11 ferrochelatase (protoheme ferro-lyase) HemH
471 27g06 malyl-coA lyase 523 10f10 ?-glutamyltranspeptidase precursor
472 28b05 argininosuccinate synthase ArgG 524 10g02 NH (3)-dependent NAD+ Sase NadE
473 30a12 urease accessory prot. (UreD homolog) 525 11e08 riboflavin synthase, ß sub. RibH
474 12h11 4-aminobutyrate aminoTase 526 13e09 pu. amino acid oxidase flavoprot. ThiO
475 30e05 w-aminoTase-like prot 527 13e11 1-deoxyxylulose-5-phosphate Sase
476 15h11 uridylyltransferase/uridylyl-removing enzyme GlnD 528 14d08 4-hydroxybenzoate octaprenylTase (polyprenylTase)
   476a 08e06 overlaps clone 15h11 529 18a08 7,8-diamino-pelargonic acid ATase (DAPA ATase) BioA
477 01e08 hydantoin racemase HyuE 530 19b10 dihydroneopterin aldolase (DHNA) FolB
    531 14g12 porphobilinogen deaminase precursor HemC
Metabolism of nucleotides and nucleic acids    532 20a12 uroporphyrinogen decarboxylase HemE
478 02b08 uracil phosphoribosylTase Upp 533 30c03 NH(3)-dependent NAD(+) Sase NadE
479 02e04 formyltetrahydrofolate synthase FthfS    533a 26c07 overlaps clone 30c03
534 28d07 NH(3)-dependent NAD(+) Sase NadE    582b 24b02 overlaps clone 21d09
535 22a09 pyridoxal phosphate biosynthetic prot. PdxA 583 15d08 VirB4-like prot., sim. to TrbeB pNGR234a
536 06a02 pyridoxamine kinase 584 06h12 DNA- binding prot. HRm / HU (histone-like prot.)
537 24d01 glutamate 1-semialdehyde 2,1-aminomutase    
538 24g03 coenzyme F390 synthetase II RNA synthesis and modification   
539 26a02 molybdopterin biosynthesis prot. 585 07b10 transcription elongation factor GreA
540 29e04 pantothenate synthetase PanC 586 27d08 transcription elongation factor GreA
    587 27e10 RNA polymerase a sub. RpoA
Metabolism of phosphate    588 17b03 ribonuclease HII RnhB
541 04f07 inorganic pyrophosphatase Ppa 589 02a01 RNA polymerase ß sub RpoB
   541a 29c05 overlaps clone 04f07 590 03e09 RNA polymerase ß sub RpoB
542 25h01 phosphonate utilization PhnJ 591 06d05 RNA polymerase ß sub RpoB
Metabolism of rhizopine    592 22h12 RNA polymerase ß sub RpoB
543 05a11 MocA oxidoreductase 593 28d10 RNA polymerase ß sub RpoB
544 07d03 MocB rhizopine-binding prot. precursor 594 16b02 RNA polymerase ß ’ sub RpoC
545 15b08 MocB rhizopine-binding prot. precursor 595 04h05 RNA polymerase primary sigma-70 factor RpoD
546 19a12 MocB rhizopine-binding prot. precursor 596 03a11 RNA polymerase sigma-E factor SigH
547 15b06 MocC rhizopine catabolism 597 21b10 RNA polymerase sigma-E factor SigC
548 18c11 MosA rhizopine biosynthesis (dihydrodipicolinate Sase) 598 27f09 RNA polymerase sigma-32 factor RpoH
   548a 04a05 overlaps clone 18c11 599 12c03 probable sigma factor SigI
549 11g06 MocB opine catabolism (phosphogluconate DTase) 600 25f08 probable sigma factor
       600a 25h04 overlaps clone 25f08
Metabolism of sulphur    601 27c10 transcription accessory prot. Tex
550 29b11 phospho-adenylylsulfate sulfoTase CysH 602 25d11 VacB ribonuclease II family
551 17a09 sulfite reductase (hemoprot. sub.) CysI 603 24a12 reverse transcriptase/maturase
Information pathways    Protein synthesis and modification   
DNA replication, restriction, modification and repair    604 29h08 GTP-binding prot. (protease) HflX
552 02f12 ribonuclease H RnhA 605 01b01 GTP-binding prot. LepA
553 05e01 DNA polymerase III a sub. DnaE    605a 20h09 overlaps clone 01b01
554 28f04 DNA polymerase e chain DnaQ    605b 25g09 overlaps clone 01b01
555 06d12 DNA polymerase III sub. gamma and tau DnaZX 606 01b02 alanyl-tRNA synthetase AlarS
556 08e04 DNA topoisomerase IV sub. A ParC 607 06a11 cystein- tRNA ligase CysS
557 11d02 primosomal replication factor Y PriA 608 26h03 glycyl tRNA-synthetase chain GlyQ
558 08g09 DNA gyrase sub. A (DNA topoisomerase II) GyrA 609 20a08 histidyl-tRNA synthetase HisS
559 14e01 DNA gyrase sub. A GyrA 610 21g03 leucyl-tRNA synthase LeuS
560 12b05 DNA gyrase sub. A GyrA 611 16h08 lysyl-tRNA synthetase LysS
561 23b07 DNA gyrase sub. B GyrB 612 19g05 phenylalanyl-tRNA synthetase chain PheS
562 29f12 DNA gyrase sub. B GyrB 613 25f01 seryl-tRNA synthetase SerS
563 12g08 replication prot. RepB 614 29d09 tryptophan- tRNA ligase TrprS
   563a 02d09 overlaps clone 12g08 615 03g06 tryptophan- tRNA ligase TrprS
564 24g07 DNA polymerase I. PolA 616 10f04 tyrosyl-tRNA synthetase TyrS
   564a 19a01 overlaps clone 24g07 617 22f04 valyl-tRNA synthetase ValS
565 01b07 excinuclease ABC sub. A (DNA repair prot.) UvrA    
566 13d07 excinuclease ABC sub. A UvrA    617a 01f12 overlaps clone 22f04
567 21e12 excinuclease ABC sub. A UvrA 618 10b10 50S ribosomal prot. L2 RplB
568 25d05 excinuclease ABC sub. C UvrC 619 10e10 50S ribosomal prot. L4 RplD
569 18g04 excinuclease ABC sub. C UvrC 620 03h08 50S ribosomal prot. L7/ L12 RplL
570 02a02 excinuclease ABC sub. C UvrC 621 18e03 50S ribosomal prot. L9 RplI
571 18g06 transcription-repair coupling factor Mfd 622 12h01 50S ribosomal prot. L13 RplM
572 04d05 uracil-DNA glycosylase Ung 623 06a03 50S ribosomal prot. L14 RplN
573 07g08 uracil-DNA glycosylase Ung    623a 20e04 overlaps clone 06a03
574 17d05 type I restriction-modification enzyme M sub. HsdM 624 23h06 50S ribosomal prot. L17 RplQ
575 23g05 type I restriction-modification enzyme M sub. HsdM 625 06c05 50S ribosomal prot. L21 RplU
576 21f03 type I restriction enzyme S sub. HsdS 626 12b06 50S ribosomal prot. L22 RplV
    627 29f09 50S ribosomal prot. L33 RpmG
DNA segregation, recombination and transfer    628 17a03 30S ribosomal prot. S1 RpsA
577 10d01 integrase/recombinase 629 25d09 30S ribosomal prot. S1 RpsA
578 11a04 integrase/recombinase 630 13c09 30S ribosomal prot. S2 RpsB
579 14b05 integrase/recombinase (y4qK pNGR234a) 631 29h04 30S ribosomal prot. S3 RpsC
580 30a10 recombination prot. RecA 632 17h03 30S ribosomal prot. S5 RpsE
581 19f08 conjugal transfer prot. TraA 633 13c05 30S ribosomal prot. S12 RpsL
582 21d09 secretory prot. kinase sim. to TrbB pNGR234a 634 22f07 30S ribosomal prot. S15 RpsQ
   582a 05d11 overlaps clone 21d09 635 02b05 30S ribosomal prot. S17 RpsQ
636 12a11 30S ribosomal prot. S21 RpsU 692 14c08 gluconate utilization system repressor; lacI family GntR
637 10f09 30S ribosomal prot. S21 RpsU 693 07e11 transcript. regulatory prot. NtaR; GntR family
638 15f06 ribosomal prot. L11 methylTase PrmA 694 08h12 hydrogen peroxide-inducible activator; lysR family OxyR
639 02c08 y4tL pNGR234a; hydrolase/ peptidase 695 08c08 ribitol operon repressor; lacI family
640 27e11 clp protease ATP binding sub. 696 14f06 transcript. repressor CytR; lacI family
641 06h11 ATP-dependent Clp protease binding sub. ClpA 697 24g11 transcript. repressor; LacI family
642 02e07 ATP-dependent Clp protease binding sub. ClpA 698 22e09 transcript. repressor; LacI family
643 22f12 ATP-dependent Clp protease binding sub. ClpA 699 28g11 transcript. repressor; LacI family
644 02f09 ATP-dependent protease regulatory ATPase sub. ClpB 700 22b04 transcript. repressor; LacI family
645 13a07 ATP-dependent protease regulatory ATPase sub. ClpB 701 17g03 catabolite control prot.; LacI family
646 26f08 ATP-dependent protease regulatory ATPase sub. ClpB 702 18b10 extragenic suppressor prot. SuhB
647 04a02 serine protease, heat shock HtrA like -prot. 703 22b12 extragenic suppressor prot. SuhB
648 10a05 N-carbamyl-L-amino acid amidohydrolase AmaB 704 25d07 transcript. regulator HexA; LysR family
649 18e01 N-carbamyl-L-amino acid amidohydrolase AmAB    704a 20a07 overlaps clone 25d07
650 26f09 peptide chain release factor 1 PrfA 705 07c07 transcript. regulator HexA; LysR family
651 12a02 peptide chain release factor 3 PrfC 706 10d07 transcript. regulator GstR; LysR family
652 14f04 O-sialoglycoprotein endopeptidase 707 18h01 transcript. regulator GstR; LysR family
653 15d11 periplasmic endopeptidase RmDEGP 708 11f05 transcript. regulator; LysR family
654 05a07 ATP-dependent RNA helicase HelO    708a 10d08 overlaps clone 11f05
655 16f11 ATP-dependent RNA helicase HelO 709 05e08 transcript. regulator y4mQ pNGR234a; LysR family
656 21f01 translation elongation factor EF-Tu    709a 16c06 overlaps clone 05e08
657 29d04 translation elongation factor EF-Tu 710 07c01 LysR-type ß-lactamase transcriptional regulator
658 23f05 translation elongation factor EF-G 711 26d11 LysR-type ß-lactamase transcriptional regulator
659 28d12 translation elongation factor EF-Ts 712 26g10 transcriptional regulator; LysR family
660 23b05 ATP-dependent Lon protease 713 20b04 transcriptional regulator TrpI; LysR family
661 01h03 L-isoaspartyl protein carboxyl methylTase 714 21c12 transcriptional regulator TrpI; LysR family
662 26c02 aminoacyl-histidine dipeptidase PepD 715 21f05 sigma-54 dependent transcript. activator 4_Rme
Regulatory functions    716 22a01 transcriptional modulator MgpS
663 05e05 exoenzyme regulatory prot. AepA 717 22a05 transcriptional regulator ChvI
664 07e12 MucR transcriptional regulatory prot.; Ros/mucR family    717a 26f05 overlaps clone 22a05
   664a 16e11 overlaps clone 07e12 718 22d06 Lrp-like transcript. regulatory4sM pNGR234a
665 29a08 SyrB (syrM repressor, y4aN, pNGR234a) 719 22g04 leucine-responsive regulatory prot.
666 07f06 sugar fermentation stimulation prot. 720 24d06 phosphoTase enzyme II, A PtsN, nitrogen regulation
667 08f09 two-component response regulator 721 25c01 cell division response regulator DivK
668 25g06 transcript. regulator; XylS/AraC family 722 27c07 response regulator PleD
669 15g01 transcript. regulator; XylS/AraC family 723 25d04 transcript. regulatory4tD pNGR234a ; AsnC family
670 09g10 transcript. regulator of NodD3, sim. to y4fK pNGR234a 724 28b08 LacI-GalR family of regulators, e.g. PckR
671 19c04 transcript. regulator of NodD3, sim. to y4fK pNGR234a Other categories   
672 11c01 transcript. regulator GlxA; XylS/AraC family Adaptation to atypical conditions and protection   
   672a 17g08 overlaps clone 11c01 725 02b01 nodulation competitiveness prot. NfeD
673 10d05 DNA-binding prot., sim. to y4wC/y4aM pNGR234a 726 16b08 choline DHase (osmoregulation) BetA
674 06c07 adenylate cyclase CyaA 727 26e09 choline DHase (osmoregulation) BetA
675 10h04 adenylate cyclase CyaA 728 19c10 betaine aldehyde DHase (osmoregulation) BetB
   675a 17b12 overlaps clone 10h04 729 06h05 choline sulfatase (osmoregulation) BetC
676 27b01 transcript. regulator of sensory transduction systems    729a 08c12 overlaps clone 06h05
   676a 13f09 overlaps clone 27b01 730 09g04 choline sulfatase (osmoregulation) BetC
677 02e03 phosphate regulatory prot. PhoB 731 13g02 betaine-aldehyde DHase (osmoregulation)
678 01d05 phosphate regulatory prot. PhoU 732 04f08 acid tolerance ActA prot.
679 03f08 pyruvate Dhase complex repressor 733 08c02 copper resistance prot. precursor (detoxification)
680 03g07 regulatory prot. PcaR 734 10f07 catalase (detoxification)
681 05a10 catabolite control prot. A CcpA 735 29c08 epoxide hydrolase (detoxification)
682 08d09 acetate repressor prot.; IclR family 736 29e02 peroxidase / catalase (detoxification)
683 09b11 FixK regulator    736a 22g02 overlaps clone 29e02
684 28b10 GacA (FixJ-like) response regulator; LuxR/UhpA family 737 19f11 cytochrome P450 (detoxification)
685 14c12 two-component response regulator; LuxR family 738 24b03 nickel resistance prot. NreB
686 17g10 transcript. regulator y4qH pNGR234a, LuxR family 739 24d08 ice nucleation prot. (cold adaptation)
687 28c10 NifR3-like regulator 740 11f07 ice nucleation prot. (cold adaptation)
688 14d06 transcript. regulatory prot. (two-component system) 741 10a08 poly-ß-hydroxybutyrate polymerase PhbC
689 14h07 transcript. activator prot. 742 24f07 poly-ß-hydroxybutyrate polymerase PhbC
690 15c11 transcript. regulator 743 14g10 poly-ß-hydroxybutyrate polymerase PhbC
691 20d01 transcript. regulator; GntR family 744 12a10 survival prot. SurE
   691a 15f07 overlaps clone 20d01 745 28e06 biotin-regulated prot. BioS
746 15b05 6’-aminoglycoside (kanamycin 6’)-N-acetylTase AacA 793 28c01 bacteriophage P22 DNA packaging prot. GP2
747 19d11 arsenate reductase (arsenical pump modifier) ArsC 794 15a01 phage T7 internal virion prot. D
748 05a05 5’-hydroxystreptomycin biosynthesis prot. StrU    
749 28e07 haloperoxidase Miscellaneous   
    795 27b07 siroheme synthetase-like prot. CysG
Transposon-related functions    796 09h11 indoleacetamide hydrolase (auxin biosynthesis)
750 25f04 ATP-binding prot. y4bM/kI/tA pNGR234a NGRIS-3 797 16e08 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH
751 26c12 ATP-binding prot. y4bL/kJ/tB pNGR234a NGRIS-3 798 18c10 NifS-like prot.
752 22b05 y4bA/pH pNGR234a NGRIS-4 799 12h07 serine/threonine prot. phosphatase
753 06e03 y4bA/pH pNGR234a NGRIS-4 800 29f06 y4vD pNGR234a, peroxiredoxin 2 family
   753a 26e03 overlaps clone 06e03 801 22b03 y4wM pNGR234a, possible binding-prot
754 11c03 y4bA/pH pNGR234a NGRIS-4 802 14c03 MelA, melanin synthesis; 4HPPD family
755 29f05 y4bA/pH pNGR234a NGRIS-4 803 14a03 aldehyde DHase
756 12a08 y4bB/pI pNGR234a NGRIS-4 804 07d01 aldehyde DHase
757 07a07 y4bC/pJ pNGR234a NGRIS-4 805 02f01 aldehyde DHase
   757a 20b11 overlaps clone 07a07 806 05g03 aldehyde DHase
758 11a02 y4bD/pK pNGR234a NGRIS-4 807 03e10 aldehyde DHase
759 23f01 y4ba/pH pNGR234a (NGRRS-1a left) NGRIS-4 808 07c02 aldehyde DHase
760 02e12 transposase y4jA/nE/sE pNGR234a NGRIS-5 809 12h02 betaine / aldehyde DHase
761 11d01 ISRm2011-2 transposase (IS630-Tc1 family) 810 09h07 betaine / aldehyde DHase
762 06d03 ISRm2011-2 transposase (IS630-Tc1 family) 811 29b08 oxidoRDase, sim. to various polyketide synthase
763 17c03 ISRm2011-2 transposase (IS630-Tc1 family) 812 14h02 molybdenum-containing aldehyde oxidoRDase
   763a 28d04 overlaps clone 17c03 813 01e11 oxidoRDase (short-chain type DHase/ RDase)
764 03f02 transposase IS1380 814 06g07 oxidoRDase (short-chain type DHase/ RDase)
765 25h02 transposase IS1380 815 18d03 y4eL pNGR234a, short-chain type DHase/ RDase
   765a 17f06 overlaps clone 25h02 816 06b08 short-chain DHase homolog
766 05h02 transposase IS1594 817 24c07 oxidoRDase
767 17h11 transposase IS200 818 16c05 oxidoRDase
768 26g05 ATP-binding prot. y4iQ/nD/sD pNGR234a NGRIS-5 819 12g04 oxidoRDase
769 17e12 IS1248b orf1; sim. to frag. fs4 pNGR234a NGRIS-9 820 07f05 NADH-dependent flavin oxidoRDase
770 13h02 IS869 orf1; sim. to frag. fs4 pNGR234a NGRIS-9 821 04e11 NADH-dependent flavin oxidoRDase
771 07h02 transposase y4sN pNGR234a NGRIS-9 822 18a09 2-hydroxyacid DHase
772 28h05 IS427 orf4; sim. to y4sN pNGR234a    822a 21c10 overlaps clone 18a09
773 18e04 transposase IS870.1 823 11b06 chlorophenol-4-monooxygenase component 1
774 19e10 RFRS9 25 kDa prot. 824 09b01 phenylacetic acid degradation prot.
   774a 04e10 overlaps clone 19e10 825 12c05 phenylacetic acid degradation prot.
775 15d07 transposase y4bF pNGR234a 826 24g08 phenylacetic acid degradation prot.
776 18f10 transposase y4qJ pNGR234a 827 09b09 export prot.
   776a 06d11 overlaps clone 18f10 828 16h05 potential multicopper oxidase
777 18c09 transposase y4qJ pNGR234a 829 24h11 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
   777a 22a11 overlaps clone 18c09 830 26d12 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
778 17g01 IS110 family transposase y4uE pNGR234a 831 09a06 ferredoxin RDase (naphthalene conversion)
779 25e06 IS110 family transposase y4uE pNGR234a 832 11f11 Carboxymuconolactone decarboxylase
780 28g06 IS110 family transposase y4uE pNGR234a 833 07b07 biotin / pyruvate carboxylase
781 11d04 IS110 transposase/integrase (C-term) 834 22h07 GTP-binding prot
782 02e10 H- repeat associated prot. 835 22b09 L-sorbose DHase (GMC oxidoRDase family)
783 27d02 H- repeat associated prot. 836 10e01 L-sorbose DHase (GMC oxidoRDase family)
784 06e10 IS-related y4hQ 837 02d05 L-sorbose DHase FAD dependent
785 26h04 IS-related y4hQ 838 24c08 carbon monoxide DHase medium sub.
786 12b01 IS-related y4hP 839 22f10 D-arabino 3-hexulose 6-P formaldehyde lyase
787 12e04 IS-related y4qI 840 27e05 NADH-dependent DHase homolog
   787a 11h07 overlaps clone 12e04 841 28b07 molybdenum-containing quinoline 2-oxidoRDase
788 30b11 IS-related y4qI 842 20e01 DHase sub. precursor
   788a 05h12 overlaps clone 30b11 843 20g03 pterin-4a-carbinolamine DTase
789 04d03 IS-related y4gE 844 21d04 contains hemolysin-type calcium-binding domain
790 20b02 IS-related y4rI 845 16e10 sulfate-starvation induced prot
   790a 25d08 overlaps clone 20b02    
    Unknown proteins of: (primary accession number)   
Phage-related functions    Escherichia coli   
791 12h09 symbiosis island integrase (phage P4 family) 846 15g10 P77388
   791a 12h08 overlaps clone 12h09 847 02a07 P32683
792 17b04 bacteriophage P22 DNA packaging prot. GP2 848 02a09 P33362
   792a 06h08 overlaps clone 17b04 849 03e01 P45528
850 03h01 P76631 908 28a02 P96267
851 05g07 P76481 909 08e12 Q50709
852 06h04 P75774 910 22g11 Q11157
853 07f09 P37007 911 10f08 O69646
854 07h06 Q46890 912 11a08 O07756
855 08b02 P21498 913 15c10 O06378
856 08b06 BAA14942 914 16f03 P95223
857 08d12 P39333 915 18e10 P96914
858 13e12 P76641 916 21g05 P72043
   858a 09c08 overlaps clone 13e12 917 25f02 P95223
859 10a03 P45568 918 29h03 O53720
860 10d02 P37675    
861 10d04 P42901 Bacillus subtilis   
862 10f12 P76481 919 16d09 O34932
863 12c11 P45475    919a 02a06 overlaps clone 16d09
864 12g02 AAC75037 920 05a01 P94437
865 15e04 P52049    920a 05g06 overlaps clone 05a01
866 15f04 P77748 921 06c04 P94937
867 16f04 BAA31826 922 06e01 AAB72069
868 17c04 P23522 923 04h03 O32272
869 18g09 AAA83544 924 07f08 AAB35255
870 18h06 AAC74284 925 08a08 BAA06611
871 18h11 P77368 926 17e06 BAA23396
872 19h07 P77165 927 19c11 P54724
873 20a06 P37619 928 11d08 P54178
874 22d02 AAC74824 929 11b08 P39640
875 22e07 AAC44004    929a 08g04 overlaps clone 11b08
876 22f08 P33362 930 11f08 P96683
877 25f09 P76397 931 09c03 P42966
878 28e04 P76397 932 17f04 O34398
879 25f10 P77470 933 24b07 P35155
880 26e05 AAC74522 934 18c06 O05220
881 27a05 AAC75727 935 24d11 Q07835
882 27e02 P39829 936 13a01 O07618
883 09c12 P37053 937 25a06 P37508
884 28f07 AAC75038 938 21a05 Q45584
885 17d02 P77391    938a 12b10 overlaps clone 21a05
886 24f10 P76235    
887 28f08 P76235 Synechocystis sp.   
888 28a06 P39338 939 04a01 BAA17151
889 30e08 P08367 940 06c03 BAA17443
890 27c11 P77165 941 04h11 BAA18318
891 02b12 P75844 942 09g07 BAA18319
892 24h06 P77334 943 13c07 BAA18330
893 22h02 P46854 944 08e11 BAA16904
   893a 21d08 overlaps clone 22h02 945 08f05 BAA17017
    946 10e06 BAA17950
Mycobacterium tuberculosis    947 10f05 BAA16766
894 02h04 O05841 948 15h10 BAA18186
895 02h08 O06320 949 25e03 AAB41278
    950 26c01 P72872
   895a 08h06 overlaps clone 02h08    950a 11h09 overlaps clone 26c01
896 03d06 O05865 951 29a07 BAA10710
897 04f10 O53858 952 01c06 BAA10835
898 04h01 O06804    
899 07e03 P71838 Haemophilus influenzae   
900 19b02 Q10846 953 01c01 P44250
901 19f01 P96814 954 01e07 P31777
902 20c01 O50466 955 06b02 Q57151
903 24h02 O07220 956 13a08 P44093
904 25a05 O06235 957 25h09 P44886
905 25b06 P71984 958 01h02 P44540
906 25h05 O53203 959 22c12 P44543
907 27h05 Q10849 960 19a07 Q57184
Agrobacterium sp.    1005 07d10 Q58322
961 03a07 AAB91569 1006 05a02 Q57883
962 05f01 AAB67296    1006a 29e09 overlaps clone 05a02
963 28b11 AAB67297    1006b 17d09 overlaps clone 05a02
964 06b11 AAB51512 1007 06f06 Q46063
965 19e06 AAC17194 1008 07b09 AAB50572
966 09h12 AAB67297 1009 02h03 AAB50572
967 17e09 P70791    1009a 12e05 overlaps clone 02h03
968 16h09 P70795 1010 04e08 AAC46053
969 01g12 P70795 1011 28h08 AAC46056
970 22b02 P70795 1012 19f10 AAA96787
    1013 10g08 BAA29686
Rhizobia    1014 02g03 BAA29099
971 17f01 P55362    1014a 13b10 overlaps clone 02g03
972 30f11 P55362 1015 11g07 AAC82835
973 16c11 P55388 1016 17e05 P46378
974 30e04 P55424 1017 17h12 AAB51777
975 27b10 P55480 1018 18a11 CAA55879
976 10b09 P55552 1019 18h10 AAB66497
977 12g11 P55552 1020 19f09 AAB85316
978 29e06 P55552 1021 19f12 O52867
979 11d10 P55590    1021a 23b03 overlaps clone 19f12
980 07c10 P55694 1022 21a11 AAB38705
981 20h08 P55706 1023 21d12 AAB09035
982 02g08 P25893 1024 12d11 AAD03878
983 11f12 P49305 1025 21a04 AAC44077
984 14b08 AAB63673 1026 22f06 AAD03845
985 16b12 AAA74241 1027 16d06 AAD03912
986 16f09 AAA74241 1028 22g06 P70734
987 16c07 AAB4153 1029 22h06 AAC46243
988 09g03 Q52991 1030 05d03 AAC06984
989 07h12 P25893    1030a 06d06 overlaps clone 05d03
990 22h03 AAA88525 1031 24b01 AAC07457
991 25c11 Q52967 1032 30a07 AAC06721
992 25g03 AAB81416 1033 01a12 P38102
993 20a04 CAA11961 1034 24d02 P55176
994 30e03 CAB01954 1035 28e05 P29938
995 20g09 AAC64871 1036 09c10 AAC44553
996 04f06 AAB17515 1037 26a12 AAB89525
997 22h04 AAB17515 1038 27f04 AAC34291
998 19e07 AAB17514 1039 29c07 C36925
999 05f08 AAA96138 1040 29d11 Q49092
1000 24e08 O69244 1041 11d06 Q15595
       1041a 07a02 overlaps clone 11d06
Other organisms       1041b 23g10 overlaps clone 11d06
1001 19a11 AAC16153 1042 06h07 P40896
1002 28a01 AAC16139 1043 24d09 P34227
1003 22d01 P30790    1043a 15f12 overlaps clone 24d09
1004 03g04 Q06373    1043b 18f08 overlaps clone 15f12
  1. Abbreviations: No, number; prot., protein; sim., similar; sub, subunit; transcript., transcriptional; transp., transport; ATase, aminotransferase; CoA, coenzyme A; DHase, dehydrogenase; DTase, dehydratase; RDase, reductase; Sase, synthase; Tase, transferase; TGase, transglycosylase.