Fig. 4

Multi-modal analysis of scImmune profiling with scRNA-seq revealed a clonotype expansion landscape in six tissues. A tSNE of cell types from the multi-modal tissues of the scImmune-profiling data. Colors represent cell types. Cell clusters were outlined and labeled. B tSNE of cell types from the multi-modal tissues of the scImmune-profiling data. Colors indicate clonal-type expansion groups of the cells. Cells not present in the T or B repertoires are shown in gray (NA group). C Stacked bar plots revealing the clonal expansion landscapes of the T and B cell repertoires across 6 tissues. Colors represent clonal type groups. D Alluvial plot showing the top clonal types in T cell repertoires and their proportions shared across the cell types. Colors represent clonotypes. E Alluvial plot showing the top clonal types in B cell repertoires and their proportions shared across the cell types. Colors represent clonotypes