Fig. 6

Overall genotyping performance of different graph-based methods based on real short-read data. The read lengths of rice (Oryza Sativa), maize (Zea mays), and apricot (Prunus armeniaca) are all 2 × 150 bp, except for A. thaliana (2 × 100 bp). For each plant genome to be genotyped, 30× short reads were used. Each plant graph was constructed from a reference genome and seven alternative genomes