Fig. 3
From: Scoary2: rapid association of phenotypic multi-omics data with microbial pan-genomes
The second page (trait.html) of the Scoary2 data exploration app. A Trait name. B Phylogenetic tree of the isolates. C Top row: presence (black)/absence (white) of orthogene. Middle row: binarized trait. Bottom row: continuous trait. D List of best candidate orthogenes with associated p-values. E Coverage matrix: The numbers in the cells tell the number of genes in the genome that have the annotation. F Pie chart that shows how the orthogene and the trait intersect in the dataset. G Histogram of the continuous values, colored by whether each isolate has the orthogene (g+/g−) and the trait (t+/t−)