Fig. 6

Evaluating the run time of SuperCellCyto and subsequent downstream analyses. A The runtime of SuperCellCyto for six cytometry datasets, measured in minutes. B The runtime of Louvain clustering for Levine_32dim, Oetjen_bcells, and Samusik_all datasets, measured in minutes. C The runtime of cyCombine and CytofRUV for correcting batch effects in Trussart_cytofRUV dataset. For both (B) and (C), x-axis denotes whether the clustering was done on single cells or supercells created using various gamma values. D The memory consumption of CytofRUV for correcting batch effects in Trussart_cytofRUV dataset either at the single cell (orange) or supercell level (blue)