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Fig. 3 | Genome Biology

Fig. 3

From: Next-Gen GWAS: full 2D epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Fig. 3

Next-Gen GWAS retrieves 1D-GWAS signal in Arabidopsis comparable to routinely used MML (EMMA [4, 23, 28]) and points to the FLC locus for flowering phenotypes. A Data from Atwell et al. (2010) have been used to compare the efficiency of our algorithm to the standards of GWAS in Arabidopsis. NGG and EMMA algorithms largely retrieve similar signals. B The phenotype 48 (days to flowering trait [8W]) NGG results are displayed. SNPS in the close vicinity of the FLC locus (a major component of flowering in plants) is represented by black dots. The scatter plot presents the fact that NGG better detects the FLC effect as compared to EMMA

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Genome Biology

ISSN: 1474-760X

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