From: A comparison of marker gene selection methods for single-cell RNA sequencing data
Dataset | N. cells | N. cell populations | Description | Technology | Citation |
---|---|---|---|---|---|
Zeisel | 3005 | 7 | Mouse brain | 10X Chromium | [72] |
pbmc3k | 2638 | 9 | PBMC | 10X Chromium | [37] |
Lawlor | 604 | 8 | Human pancreas | SMARTer v1 | [38] |
Endothelial | 30,641 | 7 | Human lung endothelium | 10X Chromium | [39] |
Astrocyte | 3013 | 10 | Mouse brain astrocytes | Single-nucleus RNA-seq | [8] |
Paul15 | 2730 | 19 | Mouse hematopoietic stem cells | MARS-seq | [40] |
Zhao | 60,672 | 29 | Human liver resident immune cells | 10X Chromium | [41] |
SS3 PBMC | 3128 | 17 | PBMC | Smart-seq3 | [42] |
CITE-seq | 8617 | 12 | CBMC | CITE-seq | [12] |
Mesenchymal | 11,408 | 9 | Human lung mesenchymal | 10X Chromium | [39] |
Stephenson | 25,000 | 15 | Human blood | 10X Chromium | |
Ren | 25,000 | 16 | Human blood | 10X Chromium | |
Yoshida | 46,431 | 19 | Human blood | 10X Chromium | |
Dominguez Conde | 25,980 | 11 | Human blood | 10X Chromium |