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Table 2 scRNA-seq datasets used in this paper

From: A comparison of marker gene selection methods for single-cell RNA sequencing data

Dataset

N. cells

N. cell populations

Description

Technology

Citation

Zeisel

3005

7

Mouse brain

10X Chromium

[72]

pbmc3k

2638

9

PBMC

10X Chromium

[37]

Lawlor

604

8

Human pancreas

SMARTer v1

[38]

Endothelial

30,641

7

Human lung endothelium

10X Chromium

[39]

Astrocyte

3013

10

Mouse brain astrocytes

Single-nucleus RNA-seq

[8]

Paul15

2730

19

Mouse hematopoietic stem cells

MARS-seq

[40]

Zhao

60,672

29

Human liver resident immune cells

10X Chromium

[41]

SS3 PBMC

3128

17

PBMC

Smart-seq3

[42]

CITE-seq

8617

12

CBMC

CITE-seq

[12]

Mesenchymal

11,408

9

Human lung mesenchymal

10X Chromium

[39]

Stephenson

25,000

15

Human blood

10X Chromium

[43, 44]

Ren

25,000

16

Human blood

10X Chromium

[43, 45]

Yoshida

46,431

19

Human blood

10X Chromium

[43, 46]

Dominguez Conde

25,980

11

Human blood

10X Chromium

[43, 47]