SSBlazer: a genome-wide nucleotide-resolution model for predicting single-strand break sites

Table 2 Datasets of single-strand break sites. Dataset I is reconstructed by the standard bioinformatics pipeline of END-seq analysis. Dataset II is provided in the original paper of SSiNGLe-ILM [19] and is established to evaluate generalization ability and cross-species performance

Index	Cell lines	Methods	Validated SSB sites	Strand-specific	Assembly	Reference
I	i\(^3\)Neurons	S1 END-seq	63,386	No	hg19	[18]
II-A	HeLa	SSiNGLe-ILM	2,331,388	Yes	hg19	[19]
II-B	Neuro2A	SSiNGLe-ILM	275,432	Yes	mm10	[19]

ISSN: 1474-760X