Fig. 4

Comparison between gpsFISH and other gene selection methods. A,B Box plot showing classification accuracy distribution of gene panels selected by 5 gene panel selection methods at different levels of partial annotation. The result is based on the Moffit dataset using evaluation with (A) and without (B) platform effect re-estimation. Naïve Bayes is used as classifier. C Normalized confusion matrix of the optimized gene panel for Moffit dataset at level 2 cell type annotation with dendrogram showing the cell type hierarchy. Diagonal values of the confusion matrix are removed for better visualization of misclassifications