Fig. 3
From: Gene panel selection for targeted spatial transcriptomics
Gene panel selection using gpsFISH. A UMAP of cells based on the mouse hypothalamic scRNA-seq data from Moffit dataset at level 1 cell type annotation. B Normalized confusion matrix of the optimized gene panel for Moffit dataset at level 1 cell type annotation. C AUC for each cell type of the same gene panel. D,E UMAP of cells based on simulated spatial transcriptomics measurements with platform effect of the optimized gene panel selected with (D) and without (E) considering platform effect at level 1 cell type annotation