Signal | Phenotype | Sex | MarkerName | Chromosome | Position (GRCh37) | EA | NEA | EAF | Nsample | Ncohort | beta | SE | P | Sample size | P_MR_Mega | P_ancestry_het | #SNPs_95_cred_set | Nearest gene | Functional candidate genes |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | I | M + F | rs67807996 | 1 | 149,995,265 | A | G | 0.31 | 35,014 | 39 | 0.067 | 0.009 | 1.04E − 12 | 34,534 | 5.98E − 11 | 1.44E − 01 | 1 | OTUD7B | OTUD7B |
2 | I | M + F | rs823094 | 1 | 205,689,807 | G | T | 0.39 | 37,407 | 39 | − 0.038 | 0.008 | 1.17E − 06 | 36,927 | 2.30E − 08 | 2.13E − 04 | 20 | RAB7L1 | NUCKS1 |
3 | I | F | rs1346789 | 2 | 56,092,052 | C | T | 0.23 | 23,173 | 24 | − 0.071 | 0.011 | 1.03E − 09 | 23,173 | 4.28E − 08 | 6.35E − 01 | 11 | EFEMP1 | EFEMP1, PNPT1 |
3 | I | M + F | rs3791679 | 2 | 56,096,892 | G | A | 0.24 | 39,411 | 40 | − 0.068 | 0.009 | 7.52E − 15 | 38,931 | 1.02E − 12 | 3.08E − 01 | 3 | EFEMP1 | EFEMP1, PNPT1 |
4 | I | M + F | rs6763927 | 3 | 141,140,366 | T | A | 0.46 | 42,928 | 45 | 0.049 | 0.007 | 4.01E − 12 | 42,448 | 4.96E − 10 | 3.39E − 01 | 16 | RASA2 | ZBTB38 |
5 | I | M + F | rs7623981 | 3 | 172,135,334 | C | T | 0.38 | 40,986 | 44 | − 0.050 | 0.008 | 4.46E − 11 | 40,506 | 2.67E − 09 | 2.17E − 01 | 6 | GHSR | GHSR |
6 | I | M + F | rs6817306 | 4 | 17,868,058 | C | T | 0.15 | 39,856 | 41 | − 0.072 | 0.011 | 1.93E − 11 | 39,376 | 1.91E − 10 | 3.79E − 02 | 6 | NCAPG | SLIT2 |
7 | IV | F | rs1712374 | 4 | 82,154,710 | C | T | 0.38 | 21,200 | 19 | 0.082 | 0.012 | 9.67E − 11 | 21,200 | 4.94E − 09 | 5.25E − 01 | 27 | PRKG2 | PRKG2 |
7 | IV | M + F | rs1443537 | 4 | 82,150,880 | A | C | 0.33 | 39,039 | 34 | 0.073 | 0.009 | 1.31E − 14 | 39,039 | 4.17E − 12 | 5.90E − 01 | 27 | PRKG2 | PRKG2 |
8 | IV | F | rs6537315 | 4 | 145,724,712 | A | G | 0.36 | 21,645 | 20 | − 0.066 | 0.012 | 1.21E − 07 | 21,645 | 4.93E − 08 | 9.26E − 03 | 11 | HHIP | HHIP |
8 | I | M + F | rs2131354 | 4 | 145,599,908 | A | G | 0.47 | 40,541 | 43 | 0.044 | 0.007 | 4.72E − 09 | 40,061 | 2.75E − 08 | 4.76E − 02 | 40 | HHIP | HHIP |
9 | I | M + F | rs409012 | 5 | 77,375,625 | C | A | 0.22 | 41,317 | 43 | − 0.053 | 0.009 | 1.60E − 09 | 40,837 | 3.98E − 08 | 1.16E − 01 | 75 | TBCA | AP3B1, OTP |
10 | IV | M + F | rs2814994 | 6 | 34,620,153 | A | T | 0.17 | 39,719 | 35 | 0.070 | 0.012 | 1.65E − 09 | 39,719 | 2.79E − 08 | 1.08E − 01 | 34 | C6orf106 (ILRUN) | C6orf106 (ILRUN) |
11 | III | M + F | rs2181193 | 6 | 105,442,327 | A | T | 0.67 | 19,472 | 26 | − 0.079 | 0.011 | 7.81E − 13 | 19,472 | 9.59E − 11 | 4.54E − 11 | 17 | LIN28B | LIN28B |
11 | V | M + F | rs7766336 | 6 | 105,388,405 | G | T | 0.68 | 40,667 | 36 | − 0.006 | 0.002 | 0.002158 | 40,667 | 6.50E − 10 | 1.01E − 08 | 10 | LIN28B | LIN28B |
11 | VI | M + F | rs314263 | 6 | 105,392,745 | T | C | 0.69 | 39,893 | 36 | 0.007 | 0.001 | 7.25E − 07 | 39,893 | 1.93E − 09 | 4.41E − 05 | 38 | LIN28B | LIN28B |
12 | I | F | rs1159619 | 6 | 126,801,144 | A | C | 0.46 | 21,466 | 22 | 0.063 | 0.010 | 4.56E − 10 | 21,466 | 2.97E − 09 | 1.22E − 01 | 129 | CENPW | RSPO3 |
12 | I | M + F | rs1361107 | 6 | 126,767,511 | C | A | 0.46 | 40,003 | 42 | 0.060 | 0.008 | 3.05E − 15 | 39,523 | 1.64E − 13 | 8.73E − 02 | 123 | CENPW | CENPW |
13 | I | M + F | rs9496369 | 6 | 142,724,918 | T | C | 0.33 | 42,928 | 45 | − 0.052 | 0.008 | 2.36E − 11 | 42,448 | 2.00E − 09 | 2.11E − 01 | 33 | ADGRG6 | ADGRG6 |
13 | IV | M + F | rs7770386 | 6 | 142,775,657 | T | C | 0.35 | 39,833 | 35 | − 0.052 | 0.009 | 1.20E − 08 | 39,833 | 2.51E − 09 | 1.65E − 03 | 14 | ADGRG6 | ADGRG6 |
14 | I | F | rs2167733 | 8 | 78,110,734 | A | G | 0.24 | 23,618 | 25 | 0.073 | 0.011 | 3.08E − 11 | 23,618 | 2.63E − 09 | 9.30E − 01 | 39 | PEX2 | HNF4G |
14 | I | M + F | rs10103623 | 8 | 78,106,082 | G | A | 0.24 | 42,295 | 45 | 0.072 | 0.008 | 2.87E − 18 | 41,815 | 2.30E − 15 | 6.99E − 01 | 36 | PEX2 | PEX2 |
15 | III | F | rs72829034 | 10 | 64,129,318 | A | C | 0.08 | 6660 | 10 | − 0.005 | 0.033 | 8.79E − 01 | 6660 | 1.30E − 09 | 3.05E − 10 | 1 | ZNF365 | ARID5B |
16 | V | M + F | rs16911905 | 11 | 5,249,290 | C | G | 0.10 | 26,380 | 21 | 0.076 | 0.017 | 6.84E − 06 | 26,380 | 1.32E − 09 | 4.03E − 06 | 1 | HBB | HBB |
17 | I | M + F | rs2724648 | 12 | 11,858,191 | T | C | 0.61 | 43,373 | 46 | − 0.049 | 0.007 | 1.58E − 11 | 42,893 | 6.62E − 09 | 9.41E − 01 | 12 | ETV6 | ETV6 |
18 | VI | M + F | rs2364232 | 12 | 93,994,827 | C | A | 0.25 | 42,873 | 40 | 0.008 | 0.001 | 1.20E − 12 | 42,873 | 1.65E − 11 | 7.54E − 02 | 5 | SOCS2 | SOCS2 |
19 | I | M + F | rs28481863 | 12 | 123,902,361 | A | G | 0.77 | 41,317 | 43 | − 0.054 | 0.009 | 1.37E − 09 | 40,837 | 4.31E − 08 | 1.58E − 01 | 155 | KMT5A | KMT5A |
19 | IV | M + F | rs28406193 | 12 | 123,891,865 | G | T | 0.74 | 41,736 | 38 | − 0.061 | 0.010 | 7.43E − 10 | 41,736 | 1.14E − 08 | 9.01E − 02 | 9 | KMT5A | KMT5A |
20 | III | F | rs36103703 | 14 | 56,284,991 | G | A | 0.18 | 5929 | 11 | − 0.035 | 0.025 | 1.56E − 01 | 5929 | 3.82E − 09 | 2.43E − 09 | 4 | KTN1 | KTN1 |
21 | I | M + F | rs11634560 | 15 | 67,467,830 | G | T | 0.25 | 38,930 | 41 | 0.058 | 0.009 | 7.58E − 11 | 38,450 | 1.98E − 08 | 9.45E − 01 | 9 | IQCH | SMAD3 |
22 | I | M + F | rs10520573 | 15 | 84,591,575 | G | A | 0.57 | 41,431 | 45 | 0.049 | 0.007 | 4.24E − 11 | 40,951 | 4.92E − 09 | 4.69E − 01 | 69 | UBE2Q2L | ADAMTSL3 |
23 | I | M + F | rs71385734 | 16 | 2,160,503 | G | T | 0.20 | 37,390 | 38 | − 0.058 | 0.010 | 6.72E − 09 | 36,910 | 8.60E − 09 | 8.80E − 03 | 8 | PKD1 | PKD1 |
24 | I | F | rs7238093 | 18 | 20,728,158 | A | T | 0.20 | 21,683 | 23 | − 0.081 | 0.012 | 5.58E − 11 | 21,683 | 4.04E − 09 | 8.60E − 01 | 15 | CABLES1 | CABLES1 |
24 | IV | F | rs8094261 | 18 | 20,746,728 | C | G | 0.78 | 21,645 | 20 | 0.095 | 0.014 | 5.46E − 11 | 21,645 | 4.89E − 09 | 7.89E − 01 | 13 | CABLES1 | CABLES1 |
24 | I | M + F | rs7244464 | 18 | 20,729,714 | C | A | 0.77 | 42,601 | 46 | 0.075 | 0.009 | 2.16E − 18 | 42,121 | 3.70E − 15 | 8.67E − 01 | 12 | CABLES1 | CABLES1 |
24 | IV | M + F | rs7238093 | 18 | 20,728,158 | T | A | 0.80 | 42,740 | 40 | 0.081 | 0.011 | 3.45E − 14 | 42,740 | 9.07E − 12 | 5.14E − 01 | 13 | CABLES1 | CABLES1 |
25 | I | M | rs143384 | 20 | 34,025,756 | G | A | 0.44 | 19,755 | 21 | 0.063 | 0.011 | 5.35E − 08 | 19,755 | 1.22E − 08 | 5.65E − 03 | 59 | GDF5 | GDF5 |
25 | I | M + F | rs143384 | 20 | 34,025,756 | G | A | 0.45 | 41,711 | 44 | 0.060 | 0.008 | 2.14E − 15 | 41,231 | 1.12E − 13 | 7.34E − 02 | 1 | GDF5 | GDF5 |
25 | IV | M + F | rs143384 | 20 | 34,025,756 | G | A | 0.49 | 41,850 | 38 | 0.063 | 0.009 | 5.81E − 12 | 41,850 | 4.06E − 10 | 2.40E − 01 | 67 | GDF5 | GDF5 |
26 | I | M + F | rs1326022 | 20 | 54,844,025 | G | A | 0.69 | 37,469 | 39 | − 0.053 | 0.008 | 4.61E − 10 | 36,989 | 4.25E − 09 | 4.83E − 02 | 19 | MC3R | MC3R |